Analysis of interatomic Contacts of Structural Units in PDB entry:
4GMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GMP entry

There are 3 chains in PDB entry 4GMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
0
 VAL 82ARG 318
1
 HIS 73LEU 297
3
 GLY 1THR 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4GMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
0
104 106Right-handed 310
Helix 2
2
0
152 157Right-handed alpha
Helix 3
3
0
160 167Right-handed alpha
Helix 4
4
0
222 226Right-handed 310
Helix 5
5
0
231 235Right-handed 310
Helix 6
6
0
240 247Right-handed 310
Helix 7
7
1
74 79Right-handed 310
Helix 8
8
1
80 85Right-handed alpha
Helix 9
9
1
112 117Right-handed 310
Helix 10
10
1
118 124Right-handed alpha
Helix 11
11
3
45 49Right-handed 310
Helix 12
12
3
61 68Right-handed 310
Helix 13
13
3
94 98Right-handed 310
Helix 14
14
3
99 106Right-handed alpha
Helix 15
15
3
145 151Right-handed alpha
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There are 10 sheets in PDB entry 4GMP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
0
100 102first strand
Strand 2
0
260 263parallel
Strand 3
0
177 181anti-parallel
Strand 4
0
301 307anti-parallel
Strand 5
0
133 134anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
0
100 102first strand
Strand 2
0
260 263parallel
Strand 3
0
177 181anti-parallel
Strand 4
0
301 307anti-parallel
Strand 5
0
138 140anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
0
227 228first strand
Strand 2
0
147 151anti-parallel
Strand 3
0
281 293anti-parallel
Strand 4
0
187 197anti-parallel
Strand 5
0
249 253anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
0
273 274first strand
Strand 2
0
168 171anti-parallel
Strand 3
0
314 317anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
88 95first strand
Strand 2
1
247 263anti-parallel
Strand 3
1
126 140anti-parallel
Strand 4
1
188 192anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
88 95first strand
Strand 2
1
247 263anti-parallel
Strand 3
3
39 40anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
106 110first strand
Strand 2
1
232 237anti-parallel
Strand 3
1
150 155anti-parallel
Strand 4
1
178 182anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
51 52first strand
Strand 2
3
211 218anti-parallel
Strand 3
3
108 121anti-parallel
Strand 4
3
164 174anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
70 74first strand
Strand 2
3
211 218anti-parallel
Strand 3
3
108 121anti-parallel
Strand 4
3
225 229anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
82 88first strand
Strand 2
3
192 198anti-parallel
Strand 3
3
130 136anti-parallel
Strand 4
3
154 158anti-parallel
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