Analysis of interatomic Contacts of Structural Units in PDB entry:
4GMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GMS entry

There are 5 chains in PDB entry 4GMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 10GLU 325
B
 GLY 1PHE 171
C
 GLY 10GLU 325
D
 GLY 1PHE 171
E
 GLY 10LEU 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 4GMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 72Right-handed alpha
Helix 2
2
A
73 80Right-handed 310
Helix 3
3
A
104 116Right-handed alpha
Helix 4
4
A
187 196Right-handed alpha
Helix 5
5
B
37 56Right-handed alpha
Helix 6
6
B
75 127Right-handed alpha
Helix 7
7
B
145 154Right-handed alpha
Helix 8
8
B
158 171Right-handed alpha
Helix 9
9
C
65 72Right-handed alpha
Helix 10
10
C
73 80Right-handed 310
Helix 11
11
C
104 116Right-handed alpha
Helix 12
12
C
187 196Right-handed alpha
Helix 13
13
D
37 56Right-handed alpha
Helix 14
14
D
75 127Right-handed alpha
Helix 15
15
D
145 154Right-handed alpha
Helix 16
16
D
158 171Right-handed alpha
Helix 17
17
E
65 72Right-handed alpha
Helix 18
18
E
73 80Right-handed 310
Helix 19
19
E
104 116Right-handed alpha
Helix 20
20
E
187 196Right-handed alpha
Helix 21
21
F
37 56Right-handed alpha
Helix 22
22
F
75 127Right-handed alpha
Helix 23
23
F
145 154Right-handed alpha
Helix 24
24
F
158 171Right-handed alpha
Helix 25
25
L
79 83Right-handed 310
Helix 26
26
L
121 128Right-handed alpha
Helix 27
27
L
183 188Right-handed alpha
Helix 28
28
H
28 32Right-handed 310
Helix 29
29
H
61 64Right-handed 310
Helix 30
30
H
83 87Right-handed 310
Helix 31
31
H
156 158Right-handed 310
Helix 32
32
H
200 203Right-handed 310
Helix 33
33
M
79 83Right-handed 310
Helix 34
34
I
28 32Right-handed 310
Helix 35
35
I
61 64Right-handed 310
Helix 36
36
I
83 87Right-handed 310
Helix 37
37
I
154 158Right-handed 310
Helix 38
38
N
79 83Right-handed 310
Helix 39
39
N
121 126Right-handed alpha
Helix 40
40
N
183 187Right-handed alpha
Helix 41
41
J
28 32Right-handed 310
Helix 42
42
J
61 64Right-handed 310
Helix 43
43
J
83 87Right-handed 310
Helix 44
44
J
156 158Right-handed 310
Helix 45
45
J
200 203Right-handed 310
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There are 63 sheets in PDB entry 4GMS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 36first strand
Strand 2
B
22 28anti-parallel
Strand 3
A
11 17anti-parallel
Strand 4
B
137 140anti-parallel
Strand 5
B
130 132anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
34 36anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
315 317anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
294 295parallel
Strand 3
A
307 308parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
274 278parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
86 89parallel
Strand 3
A
266 269parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
229 237parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
256 259anti-parallel
Strand 5
A
120 122anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
229 237parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
251 254anti-parallel
Strand 5
A
151 156anti-parallel
Strand 6
A
130 134anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 141first strand
Strand 2
A
144 146anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 169first strand
Strand 2
A
242 249anti-parallel
Strand 3
A
201 205anti-parallel
Strand 4
A
210 213anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
281 283anti-parallel
Strand 3
A
302 305anti-parallel
Strand 4
B
60 62anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 36first strand
Strand 2
D
22 28anti-parallel
Strand 3
C
11 17anti-parallel
Strand 4
D
137 140anti-parallel
Strand 5
D
130 132anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 26first strand
Strand 2
C
34 36anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 41first strand
Strand 2
C
315 317anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 44first strand
Strand 2
C
294 295parallel
Strand 3
C
307 308parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 54first strand
Strand 2
C
274 278parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
86 89parallel
Strand 3
C
266 269parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
C
229 237parallel
Strand 3
C
176 184anti-parallel
Strand 4
C
256 259anti-parallel
Strand 5
C
120 122anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
C
229 237parallel
Strand 3
C
176 184anti-parallel
Strand 4
C
251 254anti-parallel
Strand 5
C
151 156anti-parallel
Strand 6
C
130 134anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
136 141first strand
Strand 2
C
144 146anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 169first strand
Strand 2
C
242 249anti-parallel
Strand 3
C
201 205anti-parallel
Strand 4
C
210 213anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
286 287first strand
Strand 2
C
281 283anti-parallel
Strand 3
C
302 305anti-parallel
Strand 4
D
60 62anti-parallel
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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
31 36first strand
Strand 2
F
22 28anti-parallel
Strand 3
E
11 17anti-parallel
Strand 4
F
137 140anti-parallel
Strand 5
F
130 132anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
24 26first strand
Strand 2
E
34 36anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
315 317anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 44first strand
Strand 2
E
294 295parallel
Strand 3
E
307 308parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
51 54first strand
Strand 2
E
274 278parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 60first strand
Strand 2
E
86 89parallel
Strand 3
E
266 269parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
100 101first strand
Strand 2
E
229 237parallel
Strand 3
E
176 184anti-parallel
Strand 4
E
256 259anti-parallel
Strand 5
E
120 122anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
100 101first strand
Strand 2
E
229 237parallel
Strand 3
E
176 184anti-parallel
Strand 4
E
251 254anti-parallel
Strand 5
E
151 156anti-parallel
Strand 6
E
130 134anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
136 141first strand
Strand 2
E
144 146anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
164 169first strand
Strand 2
E
242 249anti-parallel
Strand 3
E
201 205anti-parallel
Strand 4
E
210 213anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
286 287first strand
Strand 2
E
281 283anti-parallel
Strand 3
E
302 305anti-parallel
Strand 4
F
60 62anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
97 98anti-parallel
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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 139anti-parallel
Strand 3
L
173 182anti-parallel
Strand 4
L
159 163anti-parallel
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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
153 154first strand
Strand 2
L
145 150anti-parallel
Strand 3
L
191 197anti-parallel
Strand 4
L
205 210anti-parallel
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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
34 40anti-parallel
Strand 5
H
44 52anti-parallel
Strand 6
H
56 59anti-parallel
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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
100 103anti-parallel
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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
120 124first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
174 184anti-parallel
Strand 4
H
163 165anti-parallel
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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
120 124first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
174 184anti-parallel
Strand 4
H
169 171anti-parallel
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There are 3 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
151 154first strand
Strand 2
H
194 199anti-parallel
Strand 3
H
204 209anti-parallel
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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
4 5first strand
Strand 2
M
19 25anti-parallel
Strand 3
M
70 75anti-parallel
Strand 4
M
62 67anti-parallel
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There are 6 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
10 13first strand
Strand 2
M
102 106parallel
Strand 3
M
85 90anti-parallel
Strand 4
M
33 38anti-parallel
Strand 5
M
45 49anti-parallel
Strand 6
M
53 54anti-parallel
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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
10 13first strand
Strand 2
M
102 106parallel
Strand 3
M
85 90anti-parallel
Strand 4
M
97 98anti-parallel
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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
114 118first strand
Strand 2
M
132 139anti-parallel
Strand 3
M
173 179anti-parallel
Strand 4
M
159 163anti-parallel
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There are 4 strands in AW sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
3 6first strand
Strand 2
I
18 25anti-parallel
Strand 3
I
77 82anti-parallel
Strand 4
I
67 72anti-parallel
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There are 6 strands in AX sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
10 11first strand
Strand 2
I
107 110parallel
Strand 3
I
88 95anti-parallel
Strand 4
I
34 39anti-parallel
Strand 5
I
45 52anti-parallel
Strand 6
I
56 59anti-parallel
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There are 4 strands in AY sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
10 11first strand
Strand 2
I
107 110parallel
Strand 3
I
88 95anti-parallel
Strand 4
I
100 103anti-parallel
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There are 4 strands in AZ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
120 124first strand
Strand 2
I
135 143anti-parallel
Strand 3
I
177 184anti-parallel
Strand 4
I
163 165anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
4 5first strand
Strand 2
N
19 25anti-parallel
Strand 3
N
70 75anti-parallel
Strand 4
N
62 67anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
10 13first strand
Strand 2
N
102 106parallel
Strand 3
N
85 90anti-parallel
Strand 4
N
33 38anti-parallel
Strand 5
N
45 49anti-parallel
Strand 6
N
53 54anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
10 13first strand
Strand 2
N
102 106parallel
Strand 3
N
85 90anti-parallel
Strand 4
N
97 98anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
114 118first strand
Strand 2
N
129 139anti-parallel
Strand 3
N
173 182anti-parallel
Strand 4
N
159 162anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
153 154first strand
Strand 2
N
145 150anti-parallel
Strand 3
N
191 197anti-parallel
Strand 4
N
205 210anti-parallel
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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
3 6first strand
Strand 2
J
18 25anti-parallel
Strand 3
J
77 82anti-parallel
Strand 4
J
67 72anti-parallel
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There are 6 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 12first strand
Strand 2
J
107 111parallel
Strand 3
J
88 95anti-parallel
Strand 4
J
34 40anti-parallel
Strand 5
J
44 52anti-parallel
Strand 6
J
56 59anti-parallel
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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 12first strand
Strand 2
J
107 111parallel
Strand 3
J
88 95anti-parallel
Strand 4
J
100 103anti-parallel
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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
120 124first strand
Strand 2
J
136 145anti-parallel
Strand 3
J
174 183anti-parallel
Strand 4
J
163 165anti-parallel
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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
120 124first strand
Strand 2
J
136 145anti-parallel
Strand 3
J
174 183anti-parallel
Strand 4
J
169 171anti-parallel
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There are 3 strands in BK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
151 154first strand
Strand 2
J
194 199anti-parallel
Strand 3
J
204 209anti-parallel
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