Analysis of interatomic Contacts of Structural Units in PDB entry:
4GMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GMV entry

There are 2 chains in PDB entry 4GMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 252THR 520
B
 LYS 252THR 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4GMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
254 265Right-handed alpha
Helix 2
2
A
292 304Right-handed alpha
Helix 3
3
A
319 321Right-handed 310
Helix 4
4
A
332 338Right-handed alpha
Helix 5
5
A
353 356Right-handed 310
Helix 6
6
A
357 362Right-handed alpha
Helix 7
7
A
363 366Right-handed 310
Helix 8
8
A
377 390Right-handed alpha
Helix 9
9
A
444 448Right-handed 310
Helix 10
10
A
455 460Right-handed alpha
Helix 11
11
A
489 506Right-handed alpha
Helix 12
12
A
506 518Right-handed alpha
Helix 13
13
B
253 257Right-handed 310
Helix 14
14
B
258 268Right-handed alpha
Helix 15
15
B
292 303Right-handed alpha
Helix 16
16
B
332 338Right-handed alpha
Helix 17
17
B
354 356Right-handed 310
Helix 18
18
B
357 362Right-handed alpha
Helix 19
19
B
363 366Right-handed 310
Helix 20
20
B
377 390Right-handed alpha
Helix 21
21
B
446 448Right-handed 310
Helix 22
22
B
455 460Right-handed alpha
Helix 23
23
B
489 506Right-handed alpha
Helix 24
24
B
506 518Right-handed alpha
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There are 2 sheets in PDB entry 4GMV. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 288first strand
Strand 2
A
270 277anti-parallel
Strand 3
A
347 351parallel
Strand 4
A
313 318anti-parallel
Strand 5
A
323 326anti-parallel
Strand 6
A
449 453anti-parallel
Strand 7
A
467 471anti-parallel
Strand 8
A
483 486anti-parallel
Strand 9
A
400 406anti-parallel
Strand 10
A
413 420anti-parallel
Strand 11
A
425 427anti-parallel
Strand 12
A
440 443anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 288first strand
Strand 2
B
270 277anti-parallel
Strand 3
B
347 352parallel
Strand 4
B
312 318anti-parallel
Strand 5
B
323 326anti-parallel
Strand 6
B
449 453anti-parallel
Strand 7
B
467 471anti-parallel
Strand 8
B
483 486anti-parallel
Strand 9
B
400 406anti-parallel
Strand 10
B
413 420anti-parallel
Strand 11
B
424 428anti-parallel
Strand 12
B
440 444anti-parallel
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