Analysis of interatomic Contacts of Structural Units in PDB entry:
4GOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GOJ entry

There are 4 chains in PDB entry 4GOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3VAL 177
B
 GLY 2VAL 177
C
 PRO 59SER 237
D
 PRO 59SER 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4GOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
19
C
61 65Right-handed 310
Helix 2
20
C
78 82Right-handed 310
Helix 3
21
C
134 140Right-handed 310
Helix 4
22
C
200 210Right-handed alpha
Helix 5
23
D
61 67Right-handed alpha
Helix 6
24
D
78 82Right-handed 310
Helix 7
25
D
134 140Right-handed 310
Helix 8
26
D
200 209Right-handed alpha
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There are 4 sheets in PDB entry 4GOJ. Click on sheet of interest to get list of strands forming it: A, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 195first strand
Strand 2
C
142 150anti-parallel
Strand 3
C
87 95anti-parallel
Strand 4
C
101 106anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 133first strand
Strand 2
C
225 236parallel
Strand 3
C
214 222anti-parallel
Strand 4
C
156 167anti-parallel
Strand 5
C
170 182anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 106first strand
Strand 2
D
87 95anti-parallel
Strand 3
D
142 150anti-parallel
Strand 4
D
187 195anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
128 133first strand
Strand 2
D
225 236parallel
Strand 3
D
214 222anti-parallel
Strand 4
D
156 167anti-parallel
Strand 5
D
170 182anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il