Analysis of interatomic Contacts of Structural Units in PDB entry:
4GOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GOT entry

There is 1 chain in PDB entry 4GOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28MSE 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4GOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 55Right-handed alpha
Helix 2
2
A
69 77Right-handed alpha
Helix 3
3
A
87 98Right-handed alpha
Helix 4
4
A
123 127Right-handed 310
Helix 5
5
A
138 140Right-handed 310
Helix 6
6
A
141 152Right-handed alpha
Helix 7
7
A
162 166Right-handed 310
Helix 8
8
A
167 169Right-handed 310
Helix 9
9
A
187 194Right-handed alpha
Helix 10
10
A
203 210Right-handed alpha
Helix 11
11
A
213 218Right-handed alpha
Helix 12
12
A
242 253Right-handed alpha
Helix 13
13
A
254 265Right-handed alpha
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There are 3 sheets in PDB entry 4GOT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
32 37parallel
Strand 3
A
82 84parallel
Strand 4
A
231 236anti-parallel
Strand 5
A
103 111anti-parallel
Strand 6
A
270 271anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 183first strand
Strand 2
A
132 136parallel
Strand 3
A
199 202parallel
Strand 4
A
115 117anti-parallel
Strand 5
A
220 221anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
171 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il