Analysis of interatomic Contacts of Structural Units in PDB entry:
4GOX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GOX entry

There is 1 chain in PDB entry 4GOX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 18PRO 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 4GOX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 51Right-handed alpha
Helix 2
2
A
68 77Right-handed alpha
Helix 3
3
A
83 94Right-handed alpha
Helix 4
4
A
96 110Right-handed alpha
Helix 5
5
A
113 125Right-handed alpha
Helix 6
6
A
136 139Right-handed 310
Helix 7
7
A
140 151Right-handed alpha
Helix 8
8
A
162 173Right-handed alpha
Helix 9
9
A
186 208Right-handed alpha
Helix 10
10
A
218 224Right-handed alpha
Helix 11
11
A
224 237Right-handed alpha
Helix 12
12
A
241 246Right-handed 310
Helix 13
13
A
268 272Right-handed 310
Helix 14
14
A
276 285Right-handed 310
Helix 15
15
A
293 303Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 4GOX.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
129 134parallel
Strand 3
A
31 35parallel
Strand 4
A
154 160parallel
Strand 5
A
213 217parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il