Analysis of interatomic Contacts of Structural Units in PDB entry:
4GP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GP1 entry

There is 1 chain in PDB entry 4GP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3LEU 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 4GP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 27Right-handed alpha
Helix 2
2
A
30 32Right-handed 310
Helix 3
3
A
33 39Right-handed alpha
Helix 4
4
A
40 42Right-handed 310
Helix 5
5
A
47 62Right-handed alpha
Helix 6
6
A
64 66Right-handed 310
Helix 7
7
A
67 89Right-handed alpha
Helix 8
8
A
99 105Right-handed alpha
Helix 9
9
A
105 126Right-handed alpha
Helix 10
10
A
129 154Right-handed alpha
Helix 11
11
A
161 167Right-handed alpha
Helix 12
12
A
173 185Right-handed alpha
Helix 13
13
A
185 201Right-handed alpha
Helix 14
14
A
203 232Right-handed alpha
Helix 15
15
A
242 247Right-handed alpha
Helix 16
16
A
252 262Right-handed alpha
Helix 17
17
A
263 275Right-handed alpha
Helix 18
18
A
280 294Right-handed alpha
Helix 19
19
A
295 316Right-handed alpha
Helix 20
20
A
321 332Right-handed alpha
Helix 21
21
A
333 340Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 4GP1.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
97 98anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il