Analysis of interatomic Contacts of Structural Units in PDB entry:
4GPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GPD entry

There are 4 chains in PDB entry 4GPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 SER 1ALA 333
2
 SER 1ALA 333
3
 SER 1ALA 333
4
 SER 1ALA 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4GPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
B1
1
9 22Right-handed alpha
Helix 2
C1
1
35 45Right-handed alpha
Helix 3
E1
1
100 111Right-handed alpha
Helix 4
H41
1
147 165Right-handed alpha
Helix 5
H51
1
208 217Right-handed alpha
Helix 6
H61
1
250 264Right-handed alpha
Helix 7
H71
1
312 333Right-handed alpha
Helix 8
B2
2
9 22Right-handed alpha
Helix 9
C2
2
35 45Right-handed alpha
Helix 10
E2
2
100 111Right-handed alpha
Helix 11
H42
2
147 165Right-handed alpha
Helix 12
H52
2
208 217Right-handed alpha
Helix 13
H62
2
250 264Right-handed alpha
Helix 14
H72
2
312 333Right-handed alpha
Helix 15
B3
3
9 22Right-handed alpha
Helix 16
C3
3
35 45Right-handed alpha
Helix 17
E3
3
100 111Right-handed alpha
Helix 18
H43
3
147 165Right-handed alpha
Helix 19
H53
3
208 217Right-handed alpha
Helix 20
H63
3
250 264Right-handed alpha
Helix 21
H73
3
312 333Right-handed alpha
Helix 22
B4
4
9 22Right-handed alpha
Helix 23
C4
4
35 45Right-handed alpha
Helix 24
E4
4
100 111Right-handed alpha
Helix 25
H44
4
147 165Right-handed alpha
Helix 26
H54
4
208 217Right-handed alpha
Helix 27
H64
4
250 264Right-handed alpha
Helix 28
H74
4
312 333Right-handed alpha
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There are 12 sheets in PDB entry 4GPD. Click on sheet of interest to get list of strands forming it: BD1, C11, C21, BD2, C12, C22, BD3, C13, C23, BD4, C14, C24,

There are 9 strands in BD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
55 59first strand
Strand 2
1
62 66anti-parallel
Strand 3
1
71 73anti-parallel
Strand 4
1
26 31parallel
Strand 5
1
2 7parallel
Strand 6
1
89 94parallel
Strand 7
1
114 119parallel
Strand 8
1
141 146parallel
Strand 9
1
125 127parallel
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There are 8 strands in C11 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
184 190first strand
Strand 2
1
191 193anti-parallel
Strand 3
1
203 207anti-parallel
Strand 4
1
223 232anti-parallel
Strand 5
1
167 178parallel
Strand 6
1
235 245anti-parallel
Strand 7
1
302 311anti-parallel
Strand 8
1
298 300anti-parallel
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There are 9 strands in C21 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
184 190first strand
Strand 2
1
191 193anti-parallel
Strand 3
1
203 207anti-parallel
Strand 4
1
223 232anti-parallel
Strand 5
1
167 178parallel
Strand 6
1
235 245anti-parallel
Strand 7
1
302 311anti-parallel
Strand 8
1
289 292anti-parallel
Strand 9
1
270 272parallel
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There are 9 strands in BD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
55 59first strand
Strand 2
2
62 66anti-parallel
Strand 3
2
71 73anti-parallel
Strand 4
2
26 31parallel
Strand 5
2
2 7parallel
Strand 6
2
89 94parallel
Strand 7
2
114 119parallel
Strand 8
2
141 146parallel
Strand 9
2
125 127parallel
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There are 8 strands in C12 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
184 190first strand
Strand 2
2
191 193anti-parallel
Strand 3
2
203 207anti-parallel
Strand 4
2
223 232anti-parallel
Strand 5
2
167 178parallel
Strand 6
2
235 245anti-parallel
Strand 7
2
302 311anti-parallel
Strand 8
2
298 300anti-parallel
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There are 9 strands in C22 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
184 190first strand
Strand 2
2
191 193anti-parallel
Strand 3
2
203 207anti-parallel
Strand 4
2
223 232anti-parallel
Strand 5
2
167 178parallel
Strand 6
2
235 245anti-parallel
Strand 7
2
302 311anti-parallel
Strand 8
2
289 292anti-parallel
Strand 9
2
270 272parallel
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There are 9 strands in BD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
55 59first strand
Strand 2
3
62 66anti-parallel
Strand 3
3
71 73anti-parallel
Strand 4
3
26 31parallel
Strand 5
3
2 7parallel
Strand 6
3
89 94parallel
Strand 7
3
114 119parallel
Strand 8
3
141 146parallel
Strand 9
3
125 127parallel
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There are 8 strands in C13 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
184 190first strand
Strand 2
3
191 193anti-parallel
Strand 3
3
203 207anti-parallel
Strand 4
3
223 232anti-parallel
Strand 5
3
167 178parallel
Strand 6
3
235 245anti-parallel
Strand 7
3
302 311anti-parallel
Strand 8
3
298 300anti-parallel
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There are 9 strands in C23 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
184 190first strand
Strand 2
3
191 193anti-parallel
Strand 3
3
203 207anti-parallel
Strand 4
3
223 232anti-parallel
Strand 5
3
167 178parallel
Strand 6
3
235 245anti-parallel
Strand 7
3
302 311anti-parallel
Strand 8
3
289 292anti-parallel
Strand 9
3
270 272parallel
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There are 9 strands in BD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
55 59first strand
Strand 2
4
62 66anti-parallel
Strand 3
4
71 73anti-parallel
Strand 4
4
26 31parallel
Strand 5
4
2 7parallel
Strand 6
4
89 94parallel
Strand 7
4
114 119parallel
Strand 8
4
141 146parallel
Strand 9
4
125 127parallel
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There are 8 strands in C14 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
184 190first strand
Strand 2
4
191 193anti-parallel
Strand 3
4
203 207anti-parallel
Strand 4
4
223 232anti-parallel
Strand 5
4
167 178parallel
Strand 6
4
235 245anti-parallel
Strand 7
4
302 311anti-parallel
Strand 8
4
298 300anti-parallel
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There are 9 strands in C24 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
184 190first strand
Strand 2
4
191 193anti-parallel
Strand 3
4
203 207anti-parallel
Strand 4
4
223 232anti-parallel
Strand 5
4
167 178parallel
Strand 6
4
235 245anti-parallel
Strand 7
4
302 311anti-parallel
Strand 8
4
289 292anti-parallel
Strand 9
4
270 272parallel
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