Analysis of interatomic Contacts of Structural Units in PDB entry:
4GQO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GQO entry

There are 3 chains in PDB entry 4GQO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 35GLN 438
B
 LYS 35GLN 438
C
 LYS 35LEU 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 4GQO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 63Right-handed alpha
Helix 2
2
A
78 89Right-handed alpha
Helix 3
3
A
100 110Right-handed alpha
Helix 4
4
A
115 119Right-handed 310
Helix 5
5
A
121 129Right-handed alpha
Helix 6
6
A
131 138Right-handed alpha
Helix 7
7
A
160 167Right-handed alpha
Helix 8
8
A
175 190Right-handed alpha
Helix 9
9
A
199 203Right-handed 310
Helix 10
10
A
205 211Right-handed 310
Helix 11
11
A
212 221Right-handed alpha
Helix 12
12
A
235 252Right-handed alpha
Helix 13
13
A
277 286Right-handed alpha
Helix 14
14
A
303 307Right-handed 310
Helix 15
15
A
328 343Right-handed alpha
Helix 16
16
A
345 357Right-handed alpha
Helix 17
17
A
368 370Right-handed 310
Helix 18
18
A
371 378Right-handed alpha
Helix 19
19
A
378 388Right-handed alpha
Helix 20
20
A
399 411Right-handed alpha
Helix 21
21
A
411 417Right-handed alpha
Helix 22
22
A
421 437Right-handed alpha
Helix 23
23
B
45 63Right-handed alpha
Helix 24
24
B
78 89Right-handed alpha
Helix 25
25
B
100 110Right-handed alpha
Helix 26
26
B
115 119Right-handed 310
Helix 27
27
B
121 129Right-handed alpha
Helix 28
28
B
131 137Right-handed alpha
Helix 29
29
B
161 167Right-handed alpha
Helix 30
30
B
175 190Right-handed alpha
Helix 31
31
B
199 203Right-handed 310
Helix 32
32
B
205 211Right-handed 310
Helix 33
33
B
212 221Right-handed alpha
Helix 34
34
B
235 252Right-handed alpha
Helix 35
35
B
277 286Right-handed alpha
Helix 36
36
B
303 307Right-handed 310
Helix 37
37
B
328 343Right-handed alpha
Helix 38
38
B
345 357Right-handed alpha
Helix 39
39
B
368 370Right-handed 310
Helix 40
40
B
371 378Right-handed alpha
Helix 41
41
B
378 388Right-handed alpha
Helix 42
42
B
399 411Right-handed alpha
Helix 43
43
B
411 417Right-handed alpha
Helix 44
44
B
421 438Right-handed alpha
Helix 45
45
C
45 63Right-handed alpha
Helix 46
46
C
78 90Right-handed alpha
Helix 47
47
C
100 110Right-handed alpha
Helix 48
48
C
115 119Right-handed 310
Helix 49
49
C
121 130Right-handed alpha
Helix 50
50
C
131 137Right-handed alpha
Helix 51
51
C
161 167Right-handed alpha
Helix 52
52
C
175 190Right-handed alpha
Helix 53
53
C
199 203Right-handed 310
Helix 54
54
C
205 211Right-handed 310
Helix 55
55
C
212 221Right-handed alpha
Helix 56
56
C
235 252Right-handed alpha
Helix 57
57
C
277 286Right-handed alpha
Helix 58
58
C
303 307Right-handed 310
Helix 59
59
C
328 344Right-handed alpha
Helix 60
60
C
345 357Right-handed alpha
Helix 61
61
C
368 370Right-handed 310
Helix 62
62
C
371 378Right-handed alpha
Helix 63
63
C
378 388Right-handed alpha
Helix 64
64
C
399 411Right-handed alpha
Helix 65
65
C
411 418Right-handed alpha
Helix 66
66
C
421 438Right-handed alpha
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There are 14 sheets in PDB entry 4GQO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 72first strand
Strand 2
A
36 42parallel
Strand 3
A
95 99parallel
Strand 4
A
314 323anti-parallel
Strand 5
A
148 154anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 72first strand
Strand 2
A
36 42parallel
Strand 3
A
95 99parallel
Strand 4
A
314 323anti-parallel
Strand 5
A
391 392parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
194 197parallel
Strand 3
A
269 274parallel
Strand 4
A
156 159anti-parallel
Strand 5
A
296 298anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
231 232anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 72first strand
Strand 2
B
36 42parallel
Strand 3
B
95 99parallel
Strand 4
B
314 323anti-parallel
Strand 5
B
148 154anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 72first strand
Strand 2
B
36 42parallel
Strand 3
B
95 99parallel
Strand 4
B
314 323anti-parallel
Strand 5
B
391 392parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 274first strand
Strand 2
B
156 160anti-parallel
Strand 3
B
295 298anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 197first strand
Strand 2
B
255 256parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
231 232anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 72first strand
Strand 2
C
36 42parallel
Strand 3
C
95 99parallel
Strand 4
C
314 323anti-parallel
Strand 5
C
148 154anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 72first strand
Strand 2
C
36 42parallel
Strand 3
C
95 99parallel
Strand 4
C
314 323anti-parallel
Strand 5
C
391 392parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
271 274first strand
Strand 2
C
156 160anti-parallel
Strand 3
C
295 298anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 197first strand
Strand 2
C
255 256parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
227 228first strand
Strand 2
C
231 232anti-parallel
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