Analysis of interatomic Contacts of Structural Units in PDB entry:
4GQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GQY entry

There are 4 chains in PDB entry 4GQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 76ARG 232
B
 GLY 76ARG 232
C
 GLY 76ARG 232
D
 GLY 76ARG 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4GQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 82Right-handed 310
Helix 2
2
A
87 89Right-handed 310
Helix 3
3
A
97 109Right-handed alpha
Helix 4
4
A
128 132Right-handed alpha
Helix 5
5
A
134 139Right-handed alpha
Helix 6
6
A
153 170Right-handed alpha
Helix 7
7
A
172 177Right-handed alpha
Helix 8
8
A
189 201Right-handed alpha
Helix 9
9
A
220 230Right-handed alpha
Helix 10
10
B
78 83Right-handed alpha
Helix 11
11
B
87 89Right-handed 310
Helix 12
12
B
97 109Right-handed alpha
Helix 13
13
B
128 135Right-handed alpha
Helix 14
14
B
159 169Right-handed alpha
Helix 15
15
B
172 177Right-handed alpha
Helix 16
16
B
189 201Right-handed alpha
Helix 17
17
B
220 232Right-handed alpha
Helix 18
18
C
78 82Right-handed 310
Helix 19
19
C
87 89Right-handed 310
Helix 20
20
C
97 108Right-handed alpha
Helix 21
21
C
128 132Right-handed alpha
Helix 22
22
C
153 170Right-handed alpha
Helix 23
23
C
172 177Right-handed alpha
Helix 24
24
C
189 201Right-handed alpha
Helix 25
25
C
220 230Right-handed alpha
Helix 26
26
D
78 83Right-handed alpha
Helix 27
27
D
87 89Right-handed 310
Helix 28
28
D
97 108Right-handed alpha
Helix 29
29
D
128 135Right-handed alpha
Helix 30
30
D
160 167Right-handed alpha
Helix 31
31
D
172 177Right-handed alpha
Helix 32
32
D
189 201Right-handed alpha
Helix 33
33
D
220 232Right-handed alpha
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There are 8 sheets in PDB entry 4GQY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
214 219anti-parallel
Strand 3
A
204 208anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
122 127anti-parallel
Strand 3
A
178 179anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
214 219anti-parallel
Strand 3
B
204 208anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 116first strand
Strand 2
B
122 127anti-parallel
Strand 3
B
178 179anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 85first strand
Strand 2
C
214 219anti-parallel
Strand 3
C
204 208anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 116first strand
Strand 2
C
122 127anti-parallel
Strand 3
C
178 179anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 85first strand
Strand 2
D
214 219anti-parallel
Strand 3
D
204 208anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 116first strand
Strand 2
D
122 127anti-parallel
Strand 3
D
178 179anti-parallel
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