Analysis of interatomic Contacts of Structural Units in PDB entry:
4GRV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GRV entry

There are 2 chains in PDB entry 4GRV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 52VAL 379
B
 ARG 8LEU 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4GRV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 89Right-handed alpha
Helix 2
2
A
98 128Right-handed alpha
Helix 3
3
A
137 173Right-handed alpha
Helix 4
4
A
186 202Right-handed alpha
Helix 5
5
A
203 207Right-handed alpha
Helix 6
6
A
219 221Right-handed 310
Helix 7
7
A
230 246Right-handed alpha
Helix 8
8
A
246 266Right-handed alpha
Helix 9
9
A
1002 1011Right-handed alpha
Helix 10
10
A
1038 1045Right-handed alpha
Helix 11
11
A
1059 1081Right-handed alpha
Helix 12
12
A
1084 1091Right-handed alpha
Helix 13
13
A
1093 1112Right-handed alpha
Helix 14
14
A
1114 1122Right-handed alpha
Helix 15
15
A
1125 1135Right-handed alpha
Helix 16
16
A
1142 1156Right-handed alpha
Helix 17
17
A
1158 1162Right-handed 310
Helix 18
18
A
301 333Right-handed alpha
Helix 19
19
A
340 374Right-handed alpha
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There are 2 sheets in PDB entry 4GRV. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
223 227anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1014 1019first strand
Strand 2
A
1025 1028anti-parallel
Strand 3
A
1031 1032anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il