Analysis of interatomic Contacts of Structural Units in PDB entry:
4GS6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GS6 entry

There is 1 chain in PDB entry 4GS6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26GLY 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 4GS6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 34Right-handed 310
Helix 2
2
A
67 69Right-handed 310
Helix 3
3
A
70 84Right-handed alpha
Helix 4
4
A
111 118Right-handed alpha
Helix 5
5
A
126 146Right-handed alpha
Helix 6
6
A
158 160Right-handed 310
Helix 7
7
A
192 196Right-handed 310
Helix 8
8
A
197 202Right-handed alpha
Helix 9
9
A
208 225Right-handed alpha
Helix 10
10
A
235 245Right-handed alpha
Helix 11
11
A
256 267Right-handed alpha
Helix 12
12
A
270 274Right-handed 310
Helix 13
13
A
276 288Right-handed alpha
Helix 14
14
A
289 291Right-handed 310
Helix 15
15
A
484 496Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4GS6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
92 96parallel
Strand 3
A
101 105anti-parallel
Strand 4
A
58 64anti-parallel
Strand 5
A
49 55anti-parallel
Strand 6
A
36 43anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
301 302anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
170 173anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
477 478parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il