Analysis of interatomic Contacts of Structural Units in PDB entry:
4GSK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GSK entry

There are 4 chains in PDB entry 4GSK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3SER 605
B
 SER 2ILE 607
Y
 MET 1GLU 165
Z
 ILE 2TYR 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 4GSK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 30Right-handed alpha
Helix 2
2
A
63 67Right-handed 310
Helix 3
3
A
89 96Right-handed alpha
Helix 4
4
A
97 116Right-handed alpha
Helix 5
5
A
117 120Right-handed 310
Helix 6
6
A
159 163Right-handed 310
Helix 7
7
A
164 175Right-handed alpha
Helix 8
8
A
193 201Right-handed alpha
Helix 9
9
A
218 230Right-handed alpha
Helix 10
10
A
293 313Right-handed alpha
Helix 11
11
A
319 324Right-handed alpha
Helix 12
12
A
333 346Right-handed alpha
Helix 13
13
A
362 366Right-handed 310
Helix 14
14
A
371 375Right-handed 310
Helix 15
15
A
378 391Right-handed alpha
Helix 16
16
A
412 429Right-handed alpha
Helix 17
17
A
443 453Right-handed alpha
Helix 18
18
A
485 489Right-handed 310
Helix 19
19
A
511 530Right-handed alpha
Helix 20
20
A
573 584Right-handed alpha
Helix 21
21
A
584 594Right-handed alpha
Helix 22
22
A
594 602Right-handed alpha
Helix 23
23
B
18 30Right-handed alpha
Helix 24
24
B
63 68Right-handed 310
Helix 25
25
B
89 96Right-handed alpha
Helix 26
26
B
97 116Right-handed alpha
Helix 27
27
B
117 120Right-handed 310
Helix 28
28
B
159 163Right-handed 310
Helix 29
29
B
164 175Right-handed alpha
Helix 30
30
B
193 201Right-handed alpha
Helix 31
31
B
218 230Right-handed alpha
Helix 32
32
B
289 292Right-handed 310
Helix 33
33
B
293 312Right-handed alpha
Helix 34
34
B
319 325Right-handed alpha
Helix 35
35
B
333 346Right-handed alpha
Helix 36
36
B
362 367Right-handed alpha
Helix 37
37
B
371 375Right-handed 310
Helix 38
38
B
378 391Right-handed alpha
Helix 39
39
B
412 430Right-handed alpha
Helix 40
40
B
439 453Right-handed alpha
Helix 41
41
B
511 530Right-handed alpha
Helix 42
42
B
573 584Right-handed alpha
Helix 43
43
B
584 594Right-handed alpha
Helix 44
44
B
594 602Right-handed alpha
Helix 45
45
Y
3 17Right-handed alpha
Helix 46
46
Y
45 55Right-handed alpha
Helix 47
47
Y
148 158Right-handed alpha
Helix 48
48
Z
3 17Right-handed alpha
Helix 49
49
Z
45 56Right-handed alpha
Helix 50
50
Z
148 158Right-handed alpha
Helix 51
51
Z
158 163Right-handed alpha
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There are 11 sheets in PDB entry 4GSK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
152 157anti-parallel
Strand 3
A
248 255anti-parallel
Strand 4
A
235 241anti-parallel
Strand 5
A
202 206parallel
Strand 6
A
180 183anti-parallel
Strand 7
A
189 190anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
59 62parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 46first strand
Strand 2
A
78 87anti-parallel
Strand 3
A
123 130parallel
Strand 4
A
135 146anti-parallel
Strand 5
A
284 287anti-parallel
Strand 6
Z
92 97parallel
Strand 7
Z
75 87anti-parallel
Strand 8
Z
59 70anti-parallel
Strand 9
Z
38 42anti-parallel
Strand 10
Z
26 31anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
135 146anti-parallel
Strand 3
A
284 287anti-parallel
Strand 4
Z
92 97parallel
Strand 5
Z
75 87anti-parallel
Strand 6
Z
128 129anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 400first strand
Strand 2
A
350 355parallel
Strand 3
A
326 330parallel
Strand 4
A
432 435parallel
Strand 5
A
456 462parallel
Strand 6
A
466 471anti-parallel
Strand 7
A
548 552anti-parallel
Strand 8
A
557 561anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
151 157anti-parallel
Strand 3
B
248 256anti-parallel
Strand 4
B
235 241anti-parallel
Strand 5
B
202 206parallel
Strand 6
B
180 183anti-parallel
Strand 7
B
189 191anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
59 62parallel
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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 46first strand
Strand 2
B
78 87anti-parallel
Strand 3
B
123 130parallel
Strand 4
B
135 146anti-parallel
Strand 5
B
284 287anti-parallel
Strand 6
Y
92 97parallel
Strand 7
Y
75 87anti-parallel
Strand 8
Y
59 70anti-parallel
Strand 9
Y
38 42anti-parallel
Strand 10
Y
26 31anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 273first strand
Strand 2
B
135 146anti-parallel
Strand 3
B
284 287anti-parallel
Strand 4
Y
92 97parallel
Strand 5
Y
75 87anti-parallel
Strand 6
Y
128 129anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 399first strand
Strand 2
B
350 354parallel
Strand 3
B
326 330parallel
Strand 4
B
432 435parallel
Strand 5
B
456 462parallel
Strand 6
B
466 472anti-parallel
Strand 7
B
548 552anti-parallel
Strand 8
B
557 561anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
539 540first strand
Strand 2
B
543 544anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il