Analysis of interatomic Contacts of Structural Units in PDB entry:
4GT2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GT2 entry

There are 4 chains in PDB entry 4GT2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 69GLY 445
A
 ALA 69GLY 445
E
 ALA 69GLY 445
G
 ALA 69ARG 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 4GT2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
73 78Right-handed alpha
Helix 2
2
B
110 130Right-handed alpha
Helix 3
3
B
158 164Right-handed alpha
Helix 4
4
B
166 170Right-handed 310
Helix 5
5
B
171 175Right-handed 310
Helix 6
6
B
186 190Right-handed 310
Helix 7
7
B
202 218Right-handed alpha
Helix 8
8
B
262 268Right-handed alpha
Helix 9
9
B
280 284Right-handed 310
Helix 10
10
B
297 302Right-handed alpha
Helix 11
11
B
305 314Right-handed alpha
Helix 12
12
B
352 357Right-handed alpha
Helix 13
13
B
358 362Right-handed 310
Helix 14
14
B
396 399Right-handed 310
Helix 15
15
B
400 412Right-handed alpha
Helix 16
16
B
414 416Right-handed 310
Helix 17
17
B
439 444Right-handed alpha
Helix 18
18
A
73 78Right-handed alpha
Helix 19
19
A
110 130Right-handed alpha
Helix 20
20
A
158 164Right-handed alpha
Helix 21
21
A
166 170Right-handed 310
Helix 22
22
A
171 175Right-handed 310
Helix 23
23
A
186 190Right-handed 310
Helix 24
24
A
202 217Right-handed alpha
Helix 25
25
A
262 268Right-handed alpha
Helix 26
26
A
280 284Right-handed 310
Helix 27
27
A
297 302Right-handed alpha
Helix 28
28
A
305 314Right-handed alpha
Helix 29
29
A
352 357Right-handed alpha
Helix 30
30
A
358 362Right-handed 310
Helix 31
31
A
396 399Right-handed 310
Helix 32
32
A
400 412Right-handed alpha
Helix 33
33
A
413 416Right-handed 310
Helix 34
34
A
439 444Right-handed alpha
Helix 35
35
E
73 78Right-handed alpha
Helix 36
36
E
110 130Right-handed alpha
Helix 37
37
E
158 165Right-handed alpha
Helix 38
38
E
166 170Right-handed 310
Helix 39
39
E
171 175Right-handed 310
Helix 40
40
E
186 190Right-handed 310
Helix 41
41
E
202 218Right-handed alpha
Helix 42
42
E
262 268Right-handed alpha
Helix 43
43
E
280 284Right-handed 310
Helix 44
44
E
297 302Right-handed alpha
Helix 45
45
E
305 314Right-handed alpha
Helix 46
46
E
352 357Right-handed alpha
Helix 47
47
E
358 362Right-handed 310
Helix 48
48
E
396 399Right-handed 310
Helix 49
49
E
400 412Right-handed alpha
Helix 50
50
E
413 416Right-handed 310
Helix 51
51
E
439 444Right-handed alpha
Helix 52
52
G
73 78Right-handed alpha
Helix 53
53
G
110 130Right-handed alpha
Helix 54
54
G
158 164Right-handed alpha
Helix 55
55
G
166 170Right-handed 310
Helix 56
56
G
171 175Right-handed 310
Helix 57
57
G
186 190Right-handed 310
Helix 58
58
G
202 218Right-handed alpha
Helix 59
59
G
262 268Right-handed alpha
Helix 60
60
G
280 284Right-handed 310
Helix 61
61
G
297 302Right-handed alpha
Helix 62
62
G
305 314Right-handed alpha
Helix 63
63
G
352 357Right-handed alpha
Helix 64
64
G
358 362Right-handed 310
Helix 65
65
G
396 399Right-handed 310
Helix 66
66
G
400 412Right-handed alpha
Helix 67
67
G
414 416Right-handed 310
Helix 68
68
G
439 444Right-handed alpha
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There are 5 sheets in PDB entry 4GT2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 369first strand
Strand 2
B
384 394anti-parallel
Strand 3
B
372 378anti-parallel
Strand 4
B
221 230anti-parallel
Strand 5
B
97 105anti-parallel
Strand 6
B
194 200anti-parallel
Strand 7
B
151 157anti-parallel
Strand 8
B
418 428anti-parallel
Strand 9
B
287 296anti-parallel
Strand 10
B
384 394anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
384 394anti-parallel
Strand 3
A
372 378anti-parallel
Strand 4
A
221 230anti-parallel
Strand 5
A
97 105anti-parallel
Strand 6
A
194 200anti-parallel
Strand 7
A
151 157anti-parallel
Strand 8
A
418 428anti-parallel
Strand 9
A
287 296anti-parallel
Strand 10
A
384 394anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
368 369first strand
Strand 2
E
384 394anti-parallel
Strand 3
E
372 378anti-parallel
Strand 4
E
221 230anti-parallel
Strand 5
E
97 105anti-parallel
Strand 6
E
194 200anti-parallel
Strand 7
E
151 157anti-parallel
Strand 8
E
418 428anti-parallel
Strand 9
E
287 296anti-parallel
Strand 10
E
384 394anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
243 244first strand
Strand 2
E
250 251anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
368 369first strand
Strand 2
G
384 394anti-parallel
Strand 3
G
372 378anti-parallel
Strand 4
G
221 230anti-parallel
Strand 5
G
97 105anti-parallel
Strand 6
G
194 200anti-parallel
Strand 7
G
151 157anti-parallel
Strand 8
G
418 428anti-parallel
Strand 9
G
287 296anti-parallel
Strand 10
G
384 394anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il