Analysis of interatomic Contacts of Structural Units in PDB entry:
4GTN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GTN entry

There is 1 chain in PDB entry 4GTN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 17GLU 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 4GTN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 32Right-handed alpha
Helix 2
2
A
37 50Right-handed alpha
Helix 3
3
A
54 69Right-handed alpha
Helix 4
4
A
71 85Right-handed alpha
Helix 5
5
A
112 125Right-handed alpha
Helix 6
6
A
143 149Right-handed alpha
Helix 7
7
A
156 168Right-handed alpha
Helix 8
8
A
181 192Right-handed alpha
Helix 9
9
A
196 201Right-handed alpha
Helix 10
10
A
202 204Right-handed 310
Helix 11
11
A
218 220Right-handed 310
Helix 12
12
A
221 232Right-handed alpha
Helix 13
13
A
271 276Right-handed 310
Helix 14
14
A
289 302Right-handed alpha
Helix 15
15
A
306 327Right-handed alpha
Helix 16
16
A
332 347Right-handed alpha
Helix 17
17
A
347 363Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 4GTN.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
127 131parallel
Strand 3
A
97 102parallel
Strand 4
A
211 215parallel
Strand 5
A
236 242parallel
Strand 6
A
255 261anti-parallel
Strand 7
A
264 270anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il