Analysis of interatomic Contacts of Structural Units in PDB entry:
4GV7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GV7 entry

There are 4 chains in PDB entry 4GV7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 663	LYS 1010
B	SER 663	LYS 1010
C	SER 663	LYS 1010
D	SER 663	THR 887

There are 58 helices in PDB entry 4GV7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	666	677	Right-handed alpha
Helix 2	2	A	678	689	Right-handed alpha
Helix 3	3	A	702	723	Right-handed alpha
Helix 4	4	A	725	740	Right-handed alpha
Helix 5	5	A	754	780	Right-handed alpha
Helix 6	6	A	788	796	Right-handed alpha
Helix 7	7	A	808	821	Right-handed alpha
Helix 8	8	A	843	853	Right-handed alpha
Helix 9	9	A	865	867	Right-handed 310
Helix 10	10	A	868	876	Right-handed alpha
Helix 11	11	A	900	906	Right-handed alpha
Helix 12	12	A	907	909	Right-handed 310
Helix 13	13	A	958	961	Right-handed 310
Helix 14	14	A	993	995	Right-handed 310
Helix 15	15	B	666	677	Right-handed alpha
Helix 16	16	B	678	689	Right-handed alpha
Helix 17	17	B	702	723	Right-handed alpha
Helix 18	18	B	725	740	Right-handed alpha
Helix 19	19	B	754	780	Right-handed alpha
Helix 20	20	B	788	797	Right-handed alpha
Helix 21	21	B	808	821	Right-handed alpha
Helix 22	22	B	843	853	Right-handed alpha
Helix 23	23	B	868	876	Right-handed alpha
Helix 24	24	B	900	906	Right-handed alpha
Helix 25	25	B	907	909	Right-handed 310
Helix 26	26	B	958	961	Right-handed 310
Helix 27	27	B	993	995	Right-handed 310
Helix 28	28	C	666	677	Right-handed alpha
Helix 29	29	C	678	689	Right-handed alpha
Helix 30	30	C	702	723	Right-handed alpha
Helix 31	31	C	725	740	Right-handed alpha
Helix 32	32	C	754	777	Right-handed alpha
Helix 33	33	C	788	797	Right-handed alpha
Helix 34	34	C	808	821	Right-handed alpha
Helix 35	35	C	843	849	Right-handed alpha
Helix 36	36	C	850	852	Right-handed 310
Helix 37	37	C	865	867	Right-handed 310
Helix 38	38	C	868	875	Right-handed alpha
Helix 39	39	C	900	906	Right-handed alpha
Helix 40	40	C	958	961	Right-handed 310
Helix 41	41	C	993	995	Right-handed 310
Helix 42	42	D	666	677	Right-handed alpha
Helix 43	43	D	678	689	Right-handed alpha
Helix 44	44	D	697	701	Right-handed 310
Helix 45	45	D	702	721	Right-handed alpha
Helix 46	46	D	725	740	Right-handed alpha
Helix 47	47	D	754	780	Right-handed alpha
Helix 48	48	D	788	797	Right-handed alpha
Helix 49	49	D	808	821	Right-handed alpha
Helix 50	50	D	823	827	Right-handed 310
Helix 51	51	D	844	849	Right-handed alpha
Helix 52	52	D	850	854	Right-handed 310
Helix 53	53	D	865	867	Right-handed 310
Helix 54	54	D	868	876	Right-handed alpha
Helix 55	55	D	900	906	Right-handed alpha
Helix 56	56	D	907	909	Right-handed 310
Helix 57	57	D	958	961	Right-handed 310
Helix 58	58	D	993	995	Right-handed 310

There are 16 sheets in PDB entry 4GV7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	799	803	first strand
Strand 2	A	829	841	anti-parallel
Strand 3	A	997	1009	anti-parallel
Strand 4	A	916	925	anti-parallel
Strand 5	A	857	863	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	895	898	first strand
Strand 2	A	988	991	anti-parallel
Strand 3	A	947	950	anti-parallel
Strand 4	A	929	932	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	954	956	first strand
Strand 2	A	974	976	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	962	964	first strand
Strand 2	A	967	969	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	799	803	first strand
Strand 2	B	829	841	anti-parallel
Strand 3	B	997	1009	anti-parallel
Strand 4	B	916	925	anti-parallel
Strand 5	B	857	864	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	895	898	first strand
Strand 2	B	988	991	anti-parallel
Strand 3	B	947	950	anti-parallel
Strand 4	B	929	932	parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	974	976	first strand
Strand 2	B	952	956	anti-parallel
Strand 3	B	984	986	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	962	963	first strand
Strand 2	B	968	969	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	802	803	first strand
Strand 2	C	829	838	anti-parallel
Strand 3	C	997	1009	anti-parallel
Strand 4	C	916	925	anti-parallel
Strand 5	C	857	863	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	895	897	first strand
Strand 2	C	988	991	anti-parallel
Strand 3	C	947	950	anti-parallel
Strand 4	C	929	932	parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	974	976	first strand
Strand 2	C	952	956	anti-parallel
Strand 3	C	984	986	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	962	964	first strand
Strand 2	C	967	969	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	802	804	first strand
Strand 2	D	829	838	anti-parallel
Strand 3	D	997	1009	anti-parallel
Strand 4	D	916	925	anti-parallel
Strand 5	D	857	862	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	895	897	first strand
Strand 2	D	988	991	anti-parallel
Strand 3	D	947	950	anti-parallel
Strand 4	D	929	932	parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	974	976	first strand
Strand 2	D	952	956	anti-parallel
Strand 3	D	984	986	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	962	964	first strand
Strand 2	D	967	969	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GV7

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GV7