Analysis of interatomic Contacts of Structural Units in PDB entry:
4GVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GVD entry

There are 4 chains in PDB entry 4GVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 837GLU 929
B
 GLY 840PRO 928
C
 THR 1ALA 8
D
 THR 1ALA 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4GVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
882 887Right-handed alpha
Helix 2
2
A
907 917Right-handed alpha
Helix 3
3
B
882 887Right-handed alpha
Helix 4
4
B
904 906Right-handed 310
Helix 5
5
B
907 916Right-handed alpha
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There are 2 sheets in PDB entry 4GVD. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
901 902first strand
Strand 2
A
894 898anti-parallel
Strand 3
A
919 925anti-parallel
Strand 4
A
843 849anti-parallel
Strand 5
C
3 8anti-parallel
Strand 6
B
860 867anti-parallel
Strand 7
B
870 878anti-parallel
Strand 8
B
894 898anti-parallel
Strand 9
B
901 902anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
842 849first strand
Strand 2
B
919 926anti-parallel
Strand 3
B
894 898anti-parallel
Strand 4
B
870 878anti-parallel
Strand 5
B
860 867anti-parallel
Strand 6
C
3 8anti-parallel
Strand 7
A
843 849anti-parallel
Strand 8
A
919 925anti-parallel
Strand 9
A
894 898anti-parallel
Strand 10
A
872 878anti-parallel
Strand 11
A
860 865anti-parallel
Strand 12
D
2 8anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il