Analysis of interatomic Contacts of Structural Units in PDB entry:
4GVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GVH entry

There are 2 chains in PDB entry 4GVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 341
B
 MET 1HIS 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4GVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 22Right-handed alpha
Helix 2
2
A
32 36Right-handed 310
Helix 3
3
A
38 53Right-handed alpha
Helix 4
4
A
82 110Right-handed alpha
Helix 5
5
A
130 134Right-handed 310
Helix 6
6
A
138 157Right-handed alpha
Helix 7
7
A
185 192Right-handed alpha
Helix 8
8
A
192 203Right-handed alpha
Helix 9
9
A
223 226Right-handed 310
Helix 10
10
A
227 232Right-handed alpha
Helix 11
11
A
249 253Right-handed 310
Helix 12
12
A
255 259Right-handed 310
Helix 13
13
A
260 272Right-handed alpha
Helix 14
14
A
281 292Right-handed alpha
Helix 15
15
A
297 304Right-handed 310
Helix 16
16
A
310 316Right-handed alpha
Helix 17
17
A
317 340Right-handed alpha
Helix 18
18
B
14 22Right-handed alpha
Helix 19
19
B
32 36Right-handed 310
Helix 20
20
B
38 53Right-handed alpha
Helix 21
21
B
82 110Right-handed alpha
Helix 22
22
B
130 134Right-handed 310
Helix 23
23
B
138 157Right-handed alpha
Helix 24
24
B
185 192Right-handed alpha
Helix 25
25
B
192 203Right-handed alpha
Helix 26
26
B
223 226Right-handed 310
Helix 27
27
B
227 232Right-handed alpha
Helix 28
28
B
261 272Right-handed alpha
Helix 29
29
B
281 292Right-handed alpha
Helix 30
30
B
297 304Right-handed 310
Helix 31
31
B
310 317Right-handed alpha
Helix 32
32
B
317 340Right-handed alpha
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There are 4 sheets in PDB entry 4GVH. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
58 61parallel
Strand 3
A
26 31parallel
Strand 4
A
4 6parallel
Strand 5
A
275 278parallel
Strand 6
A
244 247parallel
Strand 7
A
208 211parallel
Strand 8
A
161 165parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
68 69anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
58 61parallel
Strand 3
B
26 31parallel
Strand 4
B
4 6parallel
Strand 5
B
275 278parallel
Strand 6
B
244 247parallel
Strand 7
B
208 211parallel
Strand 8
B
161 165parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
68 69anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il