Analysis of interatomic Contacts of Structural Units in PDB entry:
4GVL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GVL entry

There are 3 chains in PDB entry 4GVL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 110	ARG 564
B	ALA 110	ARG 564
C	ALA 110	PRO 512

There are 85 helices in PDB entry 4GVL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	139	149	Right-handed alpha
Helix 2	2	A	162	171	Right-handed alpha
Helix 3	3	A	184	191	Right-handed alpha
Helix 4	4	A	204	219	Right-handed alpha
Helix 5	5	A	229	231	Right-handed 310
Helix 6	6	A	232	240	Right-handed alpha
Helix 7	7	A	246	260	Right-handed alpha
Helix 8	8	A	291	296	Right-handed alpha
Helix 9	9	A	296	302	Right-handed alpha
Helix 10	10	A	334	346	Right-handed alpha
Helix 11	11	A	360	371	Right-handed alpha
Helix 12	12	A	400	407	Right-handed alpha
Helix 13	13	A	408	412	Right-handed 310
Helix 14	14	A	421	436	Right-handed alpha
Helix 15	15	A	447	449	Right-handed 310
Helix 16	16	A	450	458	Right-handed alpha
Helix 17	17	A	465	479	Right-handed alpha
Helix 18	18	A	479	484	Right-handed alpha
Helix 19	19	A	497	501	Right-handed 310
Helix 20	20	A	504	509	Right-handed alpha
Helix 21	21	A	509	515	Right-handed alpha
Helix 22	22	A	550	563	Right-handed alpha
Helix 23	23	B	111	115	Right-handed alpha
Helix 24	24	B	139	149	Right-handed alpha
Helix 25	25	B	162	170	Right-handed alpha
Helix 26	26	B	184	191	Right-handed alpha
Helix 27	27	B	204	217	Right-handed alpha
Helix 28	28	B	231	239	Right-handed alpha
Helix 29	29	B	246	260	Right-handed alpha
Helix 30	30	B	291	296	Right-handed alpha
Helix 31	31	B	296	301	Right-handed alpha
Helix 32	32	B	334	346	Right-handed alpha
Helix 33	33	B	360	373	Right-handed alpha
Helix 34	34	B	400	408	Right-handed alpha
Helix 35	35	B	409	412	Right-handed 310
Helix 36	36	B	421	436	Right-handed alpha
Helix 37	37	B	450	458	Right-handed alpha
Helix 38	38	B	465	479	Right-handed alpha
Helix 39	39	B	479	487	Right-handed alpha
Helix 40	40	B	497	501	Right-handed 310
Helix 41	41	B	504	509	Right-handed alpha
Helix 42	42	B	509	515	Right-handed alpha
Helix 43	43	B	550	564	Right-handed alpha
Helix 44	44	C	113	117	Right-handed 310
Helix 45	45	C	139	149	Right-handed alpha
Helix 46	46	C	162	171	Right-handed alpha
Helix 47	47	C	184	191	Right-handed alpha
Helix 48	48	C	192	196	Right-handed 310
Helix 49	49	C	204	219	Right-handed alpha
Helix 50	50	C	229	231	Right-handed 310
Helix 51	51	C	232	239	Right-handed alpha
Helix 52	52	C	246	260	Right-handed alpha
Helix 53	53	C	334	345	Right-handed alpha
Helix 54	54	C	360	373	Right-handed alpha
Helix 55	55	C	400	407	Right-handed alpha
Helix 56	56	C	408	412	Right-handed 310
Helix 57	57	C	421	436	Right-handed alpha
Helix 58	58	C	450	457	Right-handed alpha
Helix 59	59	C	465	479	Right-handed alpha
Helix 60	60	C	504	509	Right-handed alpha
Helix 61	61	C	553	561	Right-handed alpha
Helix 62	62	D	111	115	Right-handed alpha
Helix 63	63	D	139	149	Right-handed alpha
Helix 64	64	D	162	171	Right-handed alpha
Helix 65	65	D	184	192	Right-handed alpha
Helix 66	66	D	193	196	Right-handed 310
Helix 67	67	D	204	217	Right-handed alpha
Helix 68	68	D	229	231	Right-handed 310
Helix 69	69	D	232	240	Right-handed alpha
Helix 70	70	D	246	258	Right-handed alpha
Helix 71	71	D	291	295	Right-handed 310
Helix 72	72	D	296	302	Right-handed alpha
Helix 73	73	D	334	346	Right-handed alpha
Helix 74	74	D	360	373	Right-handed alpha
Helix 75	75	D	400	407	Right-handed alpha
Helix 76	76	D	408	412	Right-handed 310
Helix 77	77	D	421	436	Right-handed alpha
Helix 78	78	D	447	449	Right-handed 310
Helix 79	79	D	450	458	Right-handed alpha
Helix 80	80	D	465	478	Right-handed alpha
Helix 81	81	D	497	501	Right-handed 310
Helix 82	82	D	504	509	Right-handed alpha
Helix 83	83	D	509	515	Right-handed alpha
Helix 84	84	D	551	556	Right-handed alpha
Helix 85	85	D	556	564	Right-handed alpha

There are 16 sheets in PDB entry 4GVL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	179	first strand
Strand 2	A	156	160	parallel
Strand 3	A	133	136	parallel
Strand 4	A	198	201	parallel
Strand 5	A	223	226	parallel
Strand 6	A	243	245	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	271	first strand
Strand 2	A	275	281	anti-parallel
Strand 3	A	328	333	anti-parallel
Strand 4	A	304	309	anti-parallel
Strand 5	A	314	315	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	395	first strand
Strand 2	A	377	381	parallel
Strand 3	A	354	357	parallel
Strand 4	A	414	417	parallel
Strand 5	A	440	445	parallel
Strand 6	A	461	464	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	495	first strand
Strand 2	A	544	549	anti-parallel
Strand 3	A	517	522	anti-parallel
Strand 4	A	529	531	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	179	first strand
Strand 2	B	156	160	parallel
Strand 3	B	133	136	parallel
Strand 4	B	198	201	parallel
Strand 5	B	223	226	parallel
Strand 6	B	243	245	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	270	first strand
Strand 2	B	276	281	anti-parallel
Strand 3	B	328	333	anti-parallel
Strand 4	B	304	309	anti-parallel
Strand 5	B	314	315	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	395	first strand
Strand 2	B	377	381	parallel
Strand 3	B	354	357	parallel
Strand 4	B	414	417	parallel
Strand 5	B	440	445	parallel
Strand 6	B	461	464	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	495	first strand
Strand 2	B	544	549	anti-parallel
Strand 3	B	517	522	anti-parallel
Strand 4	B	529	531	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	179	first strand
Strand 2	C	156	160	parallel
Strand 3	C	133	136	parallel
Strand 4	C	198	201	parallel
Strand 5	C	223	226	parallel
Strand 6	C	243	245	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	270	first strand
Strand 2	C	276	281	anti-parallel
Strand 3	C	328	333	anti-parallel
Strand 4	C	304	309	anti-parallel
Strand 5	C	314	315	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	395	first strand
Strand 2	C	377	381	parallel
Strand 3	C	354	357	parallel
Strand 4	C	414	417	parallel
Strand 5	C	440	445	parallel
Strand 6	C	461	464	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	495	first strand
Strand 2	C	544	549	anti-parallel
Strand 3	C	517	522	anti-parallel
Strand 4	C	530	531	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	179	first strand
Strand 2	D	156	160	parallel
Strand 3	D	133	136	parallel
Strand 4	D	198	201	parallel
Strand 5	D	223	226	parallel
Strand 6	D	243	245	parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	271	first strand
Strand 2	D	275	281	anti-parallel
Strand 3	D	328	333	anti-parallel
Strand 4	D	304	310	anti-parallel
Strand 5	D	313	315	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	395	first strand
Strand 2	D	377	381	parallel
Strand 3	D	354	357	parallel
Strand 4	D	414	417	parallel
Strand 5	D	440	445	parallel
Strand 6	D	461	464	parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	495	first strand
Strand 2	D	544	547	anti-parallel
Strand 3	D	518	522	anti-parallel
Strand 4	D	529	531	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GVL

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GVL