Analysis of interatomic Contacts of Structural Units in PDB entry:
4GVO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GVO entry

There are 2 chains in PDB entry 4GVO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 34TYR 269
B
 VAL 34TYR 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4GVO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 71Right-handed alpha
Helix 2
2
A
83 85Right-handed 310
Helix 3
3
A
86 93Right-handed alpha
Helix 4
4
A
106 113Right-handed alpha
Helix 5
5
A
138 143Right-handed 310
Helix 6
6
A
153 166Right-handed alpha
Helix 7
7
A
177 180Right-handed 310
Helix 8
8
A
181 188Right-handed alpha
Helix 9
9
A
197 207Right-handed alpha
Helix 10
10
A
232 249Right-handed alpha
Helix 11
11
A
250 261Right-handed alpha
Helix 12
12
A
262 265Right-handed 310
Helix 13
13
B
59 71Right-handed alpha
Helix 14
14
B
83 85Right-handed 310
Helix 15
15
B
86 93Right-handed alpha
Helix 16
16
B
106 113Right-handed alpha
Helix 17
17
B
138 142Right-handed 310
Helix 18
18
B
153 166Right-handed alpha
Helix 19
19
B
181 189Right-handed alpha
Helix 20
20
B
197 208Right-handed alpha
Helix 21
21
B
232 249Right-handed alpha
Helix 22
22
B
250 261Right-handed alpha
Helix 23
23
B
262 265Right-handed 310
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There are 9 sheets in PDB entry 4GVO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 81first strand
Strand 2
A
35 41parallel
Strand 3
A
98 99parallel
Strand 4
A
227 228anti-parallel
Strand 5
A
114 115anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
49 51anti-parallel
Strand 3
A
57 58anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
223 224anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
125 130anti-parallel
Strand 3
A
212 220anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
171 174parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 81first strand
Strand 2
B
35 41parallel
Strand 3
B
98 99parallel
Strand 4
B
227 228anti-parallel
Strand 5
B
114 115anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
49 51anti-parallel
Strand 3
B
57 58anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
223 224anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 174first strand
Strand 2
B
146 149parallel
Strand 3
B
193 196parallel
Strand 4
B
126 130anti-parallel
Strand 5
B
212 214anti-parallel
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