Analysis of interatomic Contacts of Structural Units in PDB entry:
4GVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GVS entry

There are 3 chains in PDB entry 4GVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 315
B
 MET 1GLU 315
C
 MET 1GLU 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 4GVS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 18Right-handed alpha
Helix 2
2
A
18 23Right-handed alpha
Helix 3
3
A
45 57Right-handed alpha
Helix 4
4
A
84 90Right-handed alpha
Helix 5
5
A
112 117Right-handed alpha
Helix 6
6
A
119 127Right-handed alpha
Helix 7
7
A
146 158Right-handed alpha
Helix 8
8
A
160 162Right-handed 310
Helix 9
9
A
173 182Right-handed alpha
Helix 10
10
A
183 195Right-handed alpha
Helix 11
11
A
198 200Right-handed 310
Helix 12
12
A
217 233Right-handed alpha
Helix 13
13
A
243 249Right-handed 310
Helix 14
14
A
250 254Right-handed 310
Helix 15
15
A
261 267Right-handed alpha
Helix 16
16
A
271 275Right-handed 310
Helix 17
17
A
302 310Right-handed alpha
Helix 18
18
B
3 18Right-handed alpha
Helix 19
19
B
18 23Right-handed alpha
Helix 20
20
B
45 57Right-handed alpha
Helix 21
21
B
84 90Right-handed alpha
Helix 22
22
B
112 117Right-handed alpha
Helix 23
23
B
119 127Right-handed alpha
Helix 24
24
B
146 158Right-handed alpha
Helix 25
25
B
160 162Right-handed 310
Helix 26
26
B
173 182Right-handed alpha
Helix 27
27
B
183 195Right-handed alpha
Helix 28
28
B
198 200Right-handed 310
Helix 29
29
B
217 233Right-handed alpha
Helix 30
30
B
243 249Right-handed 310
Helix 31
31
B
250 254Right-handed 310
Helix 32
32
B
260 268Right-handed alpha
Helix 33
33
B
271 275Right-handed 310
Helix 34
34
B
276 280Right-handed 310
Helix 35
35
B
302 310Right-handed alpha
Helix 36
36
C
3 18Right-handed alpha
Helix 37
37
C
18 23Right-handed alpha
Helix 38
38
C
45 57Right-handed alpha
Helix 39
39
C
84 90Right-handed alpha
Helix 40
40
C
112 117Right-handed alpha
Helix 41
41
C
119 127Right-handed alpha
Helix 42
42
C
146 158Right-handed alpha
Helix 43
43
C
160 162Right-handed 310
Helix 44
44
C
173 182Right-handed alpha
Helix 45
45
C
183 195Right-handed alpha
Helix 46
46
C
198 200Right-handed 310
Helix 47
47
C
217 233Right-handed alpha
Helix 48
48
C
243 249Right-handed 310
Helix 49
49
C
250 254Right-handed 310
Helix 50
50
C
260 268Right-handed alpha
Helix 51
51
C
271 275Right-handed 310
Helix 52
52
C
276 280Right-handed 310
Helix 53
53
C
302 310Right-handed alpha
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There are 6 sheets in PDB entry 4GVS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
164 169parallel
Strand 4
A
135 140parallel
Strand 5
A
104 109anti-parallel
Strand 6
A
97 101anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 70first strand
Strand 2
A
73 82anti-parallel
Strand 3
A
202 210anti-parallel
Strand 4
A
234 239anti-parallel
Strand 5
A
284 289parallel
Strand 6
A
295 299anti-parallel
Strand 7
B
312 313parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 313first strand
Strand 2
C
295 299parallel
Strand 3
C
284 289anti-parallel
Strand 4
C
234 239parallel
Strand 5
C
202 210anti-parallel
Strand 6
C
73 82anti-parallel
Strand 7
C
61 70anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 28first strand
Strand 2
B
34 37anti-parallel
Strand 3
B
164 169parallel
Strand 4
B
135 140parallel
Strand 5
B
104 109anti-parallel
Strand 6
B
97 101anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 70first strand
Strand 2
B
73 82anti-parallel
Strand 3
B
202 210anti-parallel
Strand 4
B
234 239anti-parallel
Strand 5
B
284 289parallel
Strand 6
B
295 299anti-parallel
Strand 7
C
312 313parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 28first strand
Strand 2
C
34 37anti-parallel
Strand 3
C
164 169parallel
Strand 4
C
135 140parallel
Strand 5
C
104 109anti-parallel
Strand 6
C
97 101anti-parallel
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