Analysis of interatomic Contacts of Structural Units in PDB entry:
4GVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GVV entry

There are 4 chains in PDB entry 4GVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2HIS 166
B
 ALA 2GLU 161
C
 ALA 2HIS 167
D
 ALA 2LEU 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4GVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 42Right-handed alpha
Helix 2
2
A
42 53Right-handed alpha
Helix 3
3
A
85 103Right-handed alpha
Helix 4
4
A
121 136Right-handed alpha
Helix 5
5
A
148 164Right-handed alpha
Helix 6
6
B
32 42Right-handed alpha
Helix 7
7
B
43 53Right-handed alpha
Helix 8
8
B
85 103Right-handed alpha
Helix 9
9
B
121 135Right-handed alpha
Helix 10
10
B
148 161Right-handed alpha
Helix 11
11
C
32 42Right-handed alpha
Helix 12
12
C
43 53Right-handed alpha
Helix 13
13
C
85 103Right-handed alpha
Helix 14
14
C
113 117Right-handed 310
Helix 15
15
C
121 136Right-handed alpha
Helix 16
16
C
148 163Right-handed alpha
Helix 17
17
D
10 14Right-handed 310
Helix 18
18
D
32 41Right-handed alpha
Helix 19
19
D
42 53Right-handed alpha
Helix 20
20
D
85 103Right-handed alpha
Helix 21
21
D
113 117Right-handed 310
Helix 22
22
D
123 135Right-handed alpha
Helix 23
23
D
152 158Right-handed alpha
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There are 4 sheets in PDB entry 4GVV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
141 146parallel
Strand 3
A
107 111parallel
Strand 4
A
18 24parallel
Strand 5
A
72 79parallel
Strand 6
A
60 64anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
141 146parallel
Strand 3
B
107 111parallel
Strand 4
B
16 24parallel
Strand 5
B
70 79parallel
Strand 6
B
60 64anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 8first strand
Strand 2
C
141 146parallel
Strand 3
C
107 111parallel
Strand 4
C
18 24parallel
Strand 5
C
72 79parallel
Strand 6
C
60 64anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 8first strand
Strand 2
D
141 146parallel
Strand 3
D
107 111parallel
Strand 4
D
18 24parallel
Strand 5
D
72 79parallel
Strand 6
D
60 64anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il