Analysis of interatomic Contacts of Structural Units in PDB entry:
4GW9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GW9 entry

There are 3 chains in PDB entry 4GW9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 8	ASP 635
B	GLY 8	ALA 634
C	GLY 8	HIS 45

There are 89 helices in PDB entry 4GW9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	53	58	Right-handed alpha
Helix 2	2	A	74	80	Right-handed alpha
Helix 3	3	A	81	83	Right-handed 310
Helix 4	4	A	135	144	Right-handed alpha
Helix 5	5	A	146	162	Right-handed alpha
Helix 6	6	A	203	213	Right-handed alpha
Helix 7	7	A	241	245	Right-handed 310
Helix 8	8	A	251	262	Right-handed alpha
Helix 9	9	A	292	334	Right-handed alpha
Helix 10	10	A	342	347	Right-handed alpha
Helix 11	11	A	354	358	Right-handed 310
Helix 12	12	A	378	390	Right-handed alpha
Helix 13	13	A	402	407	Right-handed alpha
Helix 14	14	A	408	412	Right-handed 310
Helix 15	15	A	413	418	Right-handed alpha
Helix 16	16	A	439	443	Right-handed 310
Helix 17	17	A	459	463	Right-handed 310
Helix 18	18	A	464	475	Right-handed alpha
Helix 19	19	A	486	516	Right-handed alpha
Helix 20	20	A	520	527	Right-handed alpha
Helix 21	21	A	544	549	Right-handed alpha
Helix 22	22	A	561	565	Right-handed 310
Helix 23	23	A	572	583	Right-handed alpha
Helix 24	24	B	19	23	Right-handed 310
Helix 25	25	B	53	59	Right-handed alpha
Helix 26	26	B	67	71	Right-handed 310
Helix 27	27	B	75	80	Right-handed alpha
Helix 28	28	B	81	83	Right-handed 310
Helix 29	29	B	134	142	Right-handed alpha
Helix 30	30	B	146	162	Right-handed alpha
Helix 31	31	B	203	213	Right-handed alpha
Helix 32	32	B	251	262	Right-handed alpha
Helix 33	33	B	292	334	Right-handed alpha
Helix 34	34	B	342	347	Right-handed alpha
Helix 35	35	B	354	358	Right-handed 310
Helix 36	36	B	378	390	Right-handed alpha
Helix 37	37	B	402	407	Right-handed alpha
Helix 38	38	B	408	412	Right-handed 310
Helix 39	39	B	413	418	Right-handed alpha
Helix 40	40	B	439	443	Right-handed 310
Helix 41	41	B	459	463	Right-handed 310
Helix 42	42	B	464	475	Right-handed alpha
Helix 43	43	B	484	516	Right-handed alpha
Helix 44	44	B	521	526	Right-handed alpha
Helix 45	45	B	544	549	Right-handed alpha
Helix 46	46	B	564	568	Right-handed 310
Helix 47	47	B	572	585	Right-handed alpha
Helix 48	48	C	19	23	Right-handed 310
Helix 49	49	C	53	59	Right-handed alpha
Helix 50	50	C	67	71	Right-handed 310
Helix 51	51	C	75	84	Right-handed alpha
Helix 52	52	C	133	143	Right-handed alpha
Helix 53	53	C	146	162	Right-handed alpha
Helix 54	54	C	198	202	Right-handed 310
Helix 55	55	C	203	213	Right-handed alpha
Helix 56	56	C	251	262	Right-handed alpha
Helix 57	57	C	292	337	Right-handed alpha
Helix 58	58	C	341	347	Right-handed 310
Helix 59	59	C	378	392	Right-handed alpha
Helix 60	60	C	402	407	Right-handed alpha
Helix 61	61	C	408	412	Right-handed 310
Helix 62	62	C	413	418	Right-handed alpha
Helix 63	63	C	459	463	Right-handed 310
Helix 64	64	C	464	475	Right-handed alpha
Helix 65	65	C	484	526	Right-handed alpha
Helix 66	66	C	544	549	Right-handed alpha
Helix 67	67	C	560	565	Right-handed 310
Helix 68	68	C	574	583	Right-handed alpha
Helix 69	69	D	19	23	Right-handed 310
Helix 70	70	D	53	59	Right-handed alpha
Helix 71	71	D	75	80	Right-handed alpha
Helix 72	72	D	81	83	Right-handed 310
Helix 73	73	D	133	144	Right-handed alpha
Helix 74	74	D	146	162	Right-handed alpha
Helix 75	75	D	198	202	Right-handed 310
Helix 76	76	D	203	213	Right-handed alpha
Helix 77	77	D	251	262	Right-handed alpha
Helix 78	78	D	292	334	Right-handed alpha
Helix 79	79	D	342	346	Right-handed 310
Helix 80	80	D	354	358	Right-handed 310
Helix 81	81	D	378	392	Right-handed alpha
Helix 82	82	D	402	407	Right-handed alpha
Helix 83	83	D	409	414	Right-handed 310
Helix 84	84	D	464	473	Right-handed alpha
Helix 85	85	D	484	518	Right-handed alpha
Helix 86	86	D	520	526	Right-handed alpha
Helix 87	87	D	544	551	Right-handed alpha
Helix 88	88	D	564	568	Right-handed 310
Helix 89	89	D	573	583	Right-handed alpha

There are 21 sheets in PDB entry 4GW9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	226	229	anti-parallel
Strand 3	A	47	51	anti-parallel
Strand 4	A	35	40	anti-parallel
Strand 5	A	117	123	anti-parallel
Strand 6	A	103	108	anti-parallel
Strand 7	A	93	98	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	178	184	anti-parallel
Strand 3	A	166	172	anti-parallel
Strand 4	A	276	285	anti-parallel
Strand 5	A	265	273	anti-parallel
Strand 6	A	215	218	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	374	first strand
Strand 2	A	361	366	anti-parallel
Strand 3	A	432	437	anti-parallel
Strand 4	A	419	424	anti-parallel
Strand 5	A	398	400	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	543	first strand
Strand 2	A	532	535	anti-parallel
Strand 3	A	620	623	anti-parallel
Strand 4	A	608	611	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	594	first strand
Strand 2	A	602	603	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	226	229	anti-parallel
Strand 3	B	50	51	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	40	first strand
Strand 2	B	117	123	anti-parallel
Strand 3	B	103	110	anti-parallel
Strand 4	B	92	98	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	197	first strand
Strand 2	B	178	185	anti-parallel
Strand 3	B	166	172	anti-parallel
Strand 4	B	277	285	anti-parallel
Strand 5	B	265	272	anti-parallel
Strand 6	B	215	218	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	374	first strand
Strand 2	B	361	366	anti-parallel
Strand 3	B	432	437	anti-parallel
Strand 4	B	419	424	anti-parallel
Strand 5	B	398	400	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	543	first strand
Strand 2	B	531	533	anti-parallel
Strand 3	B	621	624	anti-parallel
Strand 4	B	607	610	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	592	first strand
Strand 2	B	604	605	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	226	227	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	50	first strand
Strand 2	C	36	40	anti-parallel
Strand 3	C	117	123	anti-parallel
Strand 4	C	103	110	anti-parallel
Strand 5	C	92	98	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	178	185	anti-parallel
Strand 3	C	166	172	anti-parallel
Strand 4	C	276	285	anti-parallel
Strand 5	C	265	273	anti-parallel
Strand 6	C	215	218	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	374	first strand
Strand 2	C	361	366	anti-parallel
Strand 3	C	432	437	anti-parallel
Strand 4	C	419	424	anti-parallel
Strand 5	C	398	400	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	540	543	first strand
Strand 2	C	531	535	anti-parallel
Strand 3	C	618	624	anti-parallel
Strand 4	C	607	612	anti-parallel
Strand 5	C	588	589	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	226	227	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	35	40	anti-parallel
Strand 3	D	117	123	anti-parallel
Strand 4	D	103	110	anti-parallel
Strand 5	D	92	98	anti-parallel
Strand 6	D	73	74	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	197	first strand
Strand 2	D	178	185	anti-parallel
Strand 3	D	166	172	anti-parallel
Strand 4	D	276	285	anti-parallel
Strand 5	D	265	273	anti-parallel
Strand 6	D	215	218	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	374	first strand
Strand 2	D	361	366	anti-parallel
Strand 3	D	432	437	anti-parallel
Strand 4	D	419	424	anti-parallel
Strand 5	D	398	400	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	540	543	first strand
Strand 2	D	531	535	anti-parallel
Strand 3	D	618	624	anti-parallel
Strand 4	D	604	612	anti-parallel
Strand 5	D	588	592	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GW9

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GW9