Analysis of interatomic Contacts of Structural Units in PDB entry:
4GWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GWP entry

There are 7 chains in PDB entry 4GWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4LYS 115
B
 ASN 182VAL 687
C
 PHE 23THR 214
D
 MET 1THR 121
E
 VAL 2ALA 301
F
 GLY 2LEU 210
G
 MET 1ILE 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 4GWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 38Right-handed alpha
Helix 2
2
A
41 43Right-handed 310
Helix 3
3
A
44 79Right-handed alpha
Helix 4
4
A
92 113Right-handed alpha
Helix 5
5
B
183 190Right-handed alpha
Helix 6
6
B
198 229Right-handed alpha
Helix 7
7
B
231 239Right-handed alpha
Helix 8
8
B
241 246Right-handed alpha
Helix 9
9
B
257 267Right-handed alpha
Helix 10
10
B
267 314Right-handed alpha
Helix 11
11
B
424 452Right-handed alpha
Helix 12
12
B
495 526Right-handed alpha
Helix 13
13
B
534 538Right-handed 310
Helix 14
14
B
539 540Right-handed 310
Helix 15
15
B
541 568Right-handed alpha
Helix 16
16
B
579 584Right-handed alpha
Helix 17
17
B
596 615Right-handed alpha
Helix 18
18
B
671 685Right-handed alpha
Helix 19
19
C
32 56Right-handed alpha
Helix 20
20
C
62 87Right-handed alpha
Helix 21
21
C
87 95Right-handed alpha
Helix 22
22
C
101 105Right-handed 310
Helix 23
23
C
109 115Right-handed alpha
Helix 24
24
C
122 131Right-handed alpha
Helix 25
25
C
140 168Right-handed alpha
Helix 26
26
C
183 191Right-handed alpha
Helix 27
27
C
197 208Right-handed alpha
Helix 28
28
D
2 31Right-handed alpha
Helix 29
29
D
46 85Right-handed alpha
Helix 30
30
D
103 117Right-handed alpha
Helix 31
31
E
13 28Right-handed alpha
Helix 32
32
E
71 75Right-handed 310
Helix 33
33
E
85 94Right-handed alpha
Helix 34
34
E
102 107Right-handed alpha
Helix 35
35
E
199 207Right-handed alpha
Helix 36
36
E
225 227Right-handed 310
Helix 37
37
E
264 282Right-handed alpha
Helix 38
38
E
292 297Right-handed 310
Helix 39
39
F
15 23Right-handed alpha
Helix 40
40
F
83 87Right-handed 310
Helix 41
41
F
88 94Right-handed alpha
Helix 42
42
F
103 112Right-handed alpha
Helix 43
43
F
162 177Right-handed alpha
Helix 44
44
F
195 208Right-handed alpha
Helix 45
45
G
23 34Right-handed alpha
Helix 46
46
G
38 50Right-handed alpha
Helix 47
47
G
88 95Right-handed alpha
Helix 48
48
G
99 111Right-handed alpha
Helix 49
49
G
168 189Right-handed alpha
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There are 9 sheets in PDB entry 4GWP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 327first strand
Strand 2
B
335 340anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 359first strand
Strand 2
B
362 368anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 388first strand
Strand 2
B
484 485anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 410first strand
Strand 2
B
391 396anti-parallel
Strand 3
B
472 479anti-parallel
Strand 4
B
463 469anti-parallel
Strand 5
B
457 459anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
574 578first strand
Strand 2
B
616 624anti-parallel
Strand 3
B
628 637anti-parallel
Strand 4
B
642 651anti-parallel
Strand 5
B
655 660anti-parallel
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There are 16 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
243 245first strand
Strand 2
E
229 238anti-parallel
Strand 3
E
209 223anti-parallel
Strand 4
E
32 43anti-parallel
Strand 5
E
64 68anti-parallel
Strand 6
E
164 169anti-parallel
Strand 7
E
181 195anti-parallel
Strand 8
F
76 81anti-parallel
Strand 9
F
67 73anti-parallel
Strand 10
F
57 63anti-parallel
Strand 11
F
30 44anti-parallel
Strand 12
F
116 132anti-parallel
Strand 13
F
135 144anti-parallel
Strand 14
F
147 157anti-parallel
Strand 15
F
3 9anti-parallel
Strand 16
F
183 185anti-parallel
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There are 14 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
243 245first strand
Strand 2
E
229 238anti-parallel
Strand 3
E
250 259anti-parallel
Strand 4
E
3 12anti-parallel
Strand 5
E
181 195anti-parallel
Strand 6
F
76 81anti-parallel
Strand 7
F
67 73anti-parallel
Strand 8
F
57 63anti-parallel
Strand 9
F
30 44anti-parallel
Strand 10
F
116 132anti-parallel
Strand 11
F
135 144anti-parallel
Strand 12
F
147 157anti-parallel
Strand 13
F
3 9anti-parallel
Strand 14
F
183 185anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
112 115first strand
Strand 2
G
118 130anti-parallel
Strand 3
G
133 144anti-parallel
Strand 4
G
147 158anti-parallel
Strand 5
G
161 164anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 256first strand
Strand 2
C
94 98anti-parallel
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