Analysis of interatomic Contacts of Structural Units in PDB entry:
4GXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GXP entry

There are 3 chains in PDB entry 4GXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 11GLU 466
B
 LYS 11GLU 466
C
 LYS 11ASP 467
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 4GXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 29Right-handed alpha
Helix 2
2
A
33 37Right-handed 310
Helix 3
3
A
40 47Right-handed alpha
Helix 4
4
A
63 79Right-handed alpha
Helix 5
5
A
88 93Right-handed alpha
Helix 6
6
A
101 119Right-handed alpha
Helix 7
7
A
132 138Right-handed alpha
Helix 8
8
A
139 144Right-handed 310
Helix 9
9
A
145 162Right-handed alpha
Helix 10
10
A
173 183Right-handed alpha
Helix 11
11
A
195 219Right-handed alpha
Helix 12
12
A
240 255Right-handed alpha
Helix 13
13
A
255 265Right-handed alpha
Helix 14
14
A
268 276Right-handed alpha
Helix 15
15
A
277 279Right-handed 310
Helix 16
16
A
283 291Right-handed alpha
Helix 17
17
A
348 363Right-handed alpha
Helix 18
18
A
388 408Right-handed alpha
Helix 19
19
A
426 430Right-handed 310
Helix 20
20
A
450 463Right-handed alpha
Helix 21
21
B
24 29Right-handed alpha
Helix 22
22
B
40 47Right-handed alpha
Helix 23
23
B
63 79Right-handed alpha
Helix 24
24
B
88 93Right-handed alpha
Helix 25
25
B
101 118Right-handed alpha
Helix 26
26
B
132 138Right-handed alpha
Helix 27
27
B
139 144Right-handed 310
Helix 28
28
B
145 160Right-handed alpha
Helix 29
29
B
173 183Right-handed alpha
Helix 30
30
B
195 219Right-handed alpha
Helix 31
31
B
240 265Right-handed alpha
Helix 32
32
B
268 276Right-handed alpha
Helix 33
33
B
277 279Right-handed 310
Helix 34
34
B
283 291Right-handed alpha
Helix 35
35
B
348 363Right-handed alpha
Helix 36
36
B
388 410Right-handed alpha
Helix 37
37
B
426 430Right-handed 310
Helix 38
38
B
450 463Right-handed alpha
Helix 39
39
C
40 48Right-handed alpha
Helix 40
40
C
63 72Right-handed alpha
Helix 41
41
C
73 79Right-handed alpha
Helix 42
42
C
88 93Right-handed alpha
Helix 43
43
C
101 118Right-handed alpha
Helix 44
44
C
132 137Right-handed alpha
Helix 45
45
C
138 143Right-handed 310
Helix 46
46
C
145 162Right-handed alpha
Helix 47
47
C
174 183Right-handed alpha
Helix 48
48
C
195 199Right-handed 310
Helix 49
49
C
201 214Right-handed alpha
Helix 50
50
C
215 218Right-handed 310
Helix 51
51
C
240 253Right-handed alpha
Helix 52
52
C
255 265Right-handed alpha
Helix 53
53
C
268 276Right-handed alpha
Helix 54
54
C
283 290Right-handed alpha
Helix 55
55
C
347 362Right-handed alpha
Helix 56
56
C
388 408Right-handed alpha
Helix 57
57
C
426 430Right-handed 310
Helix 58
58
C
450 461Right-handed alpha
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There are 9 sheets in PDB entry 4GXP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
82 86parallel
Strand 3
A
121 127parallel
Strand 4
A
167 172parallel
Strand 5
A
223 228parallel
Strand 6
A
297 300parallel
Strand 7
A
367 372parallel
Strand 8
A
413 419parallel
Strand 9
A
18 22parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
304 308parallel
Strand 3
A
324 326anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 440first strand
Strand 2
A
447 449anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 227first strand
Strand 2
B
167 172parallel
Strand 3
B
121 127parallel
Strand 4
B
82 86parallel
Strand 5
B
18 22parallel
Strand 6
B
413 419parallel
Strand 7
B
367 372parallel
Strand 8
B
297 300parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 235first strand
Strand 2
B
304 308parallel
Strand 3
B
324 326anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
438 440first strand
Strand 2
B
447 449anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 85first strand
Strand 2
C
18 23parallel
Strand 3
C
413 418parallel
Strand 4
C
367 371parallel
Strand 5
C
297 300parallel
Strand 6
C
227 228parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
169 171parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
232 235first strand
Strand 2
C
304 307parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il