Analysis of interatomic Contacts of Structural Units in PDB entry:
4GXQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GXQ entry

There are 70 chains in PDB entry 4GXQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 11
A	LEU 13	HIS 17
A	LEU 19	ASP 27
A	ILE 29	GLU 61
A	SER 63	PRO 101
A	ILE 103	SER 109
A	ARG 111	ALA 119
A	VAL 121	SER 170
A	GLY 172	PRO 229
A	PHE 231	ASP 234
A	ILE 236	THR 263
A	GLU 265	ALA 290
A	THR 292	GLY 339
A	GLU 341	VAL 352
A	GLY 354	PHE 358
A	GLY 360	GLU 366
A	THR 368	THR 368
A	SER 370	GLY 384
A	ILE 386	GLY 398
A	ASP 400	PRO 411
A	GLU 413	LEU 447
A	ARG 449	LEU 461
A	ALA 463	VAL 465
A	ASP 467	ALA 470
A	PHE 472	PHE 472
A	MET 474	PRO 475
A	VAL 478	GLN 493
A	ASN 495	TYR 501
A	ASP 503	TYR 505
B	MET 1	ASP 11
B	LEU 13	HIS 17
B	LEU 19	ASP 27
B	ILE 29	GLU 61
B	SER 63	PRO 101
B	ILE 103	SER 109
B	ARG 111	ALA 119
B	VAL 121	SER 170
B	GLY 172	PRO 229
B	PHE 231	ASP 234
B	ILE 236	THR 263
B	GLU 265	ALA 290
B	THR 292	GLY 339
B	GLU 341	VAL 352
B	GLY 354	PHE 358
B	GLY 360	GLU 366
B	THR 368	THR 368
B	SER 370	GLY 384
B	ILE 386	GLY 398
B	ASP 400	PRO 411
B	GLU 413	LEU 447
B	ARG 449	LEU 461
B	ALA 463	VAL 465
B	ASP 467	ALA 470
B	PHE 472	PHE 472
B	MET 474	PRO 475
B	VAL 478	GLN 493
B	ASN 495	TYR 501
B	ASP 503	TYR 505
C	MET 1	ASP 11
C	LEU 13	HIS 17
C	LEU 19	ASP 27
C	ILE 29	GLU 61
C	SER 63	PRO 101
C	ILE 103	SER 109
C	ARG 111	ALA 119
C	VAL 121	SER 170
C	GLY 172	PRO 229
C	PHE 231	ASP 234
C	ILE 236	THR 263
C	GLU 265	PHE 273

There are 60 helices in PDB entry 4GXQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	4	11	Right-handed alpha
Helix 2	2	A	31	48	Right-handed alpha
Helix 3	3	A	63	76	Right-handed alpha
Helix 4	4	A	88	100	Right-handed alpha
Helix 5	5	A	110	120	Right-handed alpha
Helix 6	6	A	134	142	Right-handed alpha
Helix 7	7	A	177	191	Right-handed alpha
Helix 8	8	A	207	212	Right-handed alpha
Helix 9	9	A	212	222	Right-handed alpha
Helix 10	10	A	232	240	Right-handed alpha
Helix 11	11	A	241	243	Right-handed 310
Helix 12	12	A	249	258	Right-handed alpha
Helix 13	13	A	263	268	Right-handed alpha
Helix 14	14	A	281	293	Right-handed alpha
Helix 15	15	A	364	372	Right-handed alpha
Helix 16	16	A	399	401	Right-handed 310
Helix 17	17	A	410	420	Right-handed alpha
Helix 18	18	A	454	465	Right-handed alpha
Helix 19	19	A	470	474	Right-handed 310
Helix 20	20	A	493	501	Right-handed alpha
Helix 21	21	B	4	11	Right-handed alpha
Helix 22	22	B	31	48	Right-handed alpha
Helix 23	23	B	63	76	Right-handed alpha
Helix 24	24	B	88	100	Right-handed alpha
Helix 25	25	B	107	109	Right-handed 310
Helix 26	26	B	110	121	Right-handed alpha
Helix 27	27	B	134	143	Right-handed alpha
Helix 28	28	B	177	191	Right-handed alpha
Helix 29	29	B	207	212	Right-handed alpha
Helix 30	30	B	212	222	Right-handed alpha
Helix 31	31	B	232	240	Right-handed alpha
Helix 32	32	B	241	243	Right-handed 310
Helix 33	33	B	249	257	Right-handed alpha
Helix 34	34	B	263	268	Right-handed alpha
Helix 35	35	B	281	293	Right-handed alpha
Helix 36	36	B	364	372	Right-handed alpha
Helix 37	37	B	399	401	Right-handed 310
Helix 38	38	B	410	421	Right-handed alpha
Helix 39	39	B	454	466	Right-handed alpha
Helix 40	40	B	470	474	Right-handed 310
Helix 41	41	B	493	501	Right-handed alpha
Helix 42	42	C	4	11	Right-handed alpha
Helix 43	43	C	31	48	Right-handed alpha
Helix 44	44	C	63	76	Right-handed alpha
Helix 45	45	C	88	100	Right-handed alpha
Helix 46	46	C	110	121	Right-handed alpha
Helix 47	47	C	134	142	Right-handed alpha
Helix 48	48	C	177	191	Right-handed alpha
Helix 49	49	C	207	222	Right-handed alpha
Helix 50	50	C	232	240	Right-handed alpha
Helix 51	51	C	241	243	Right-handed 310
Helix 52	52	C	249	258	Right-handed alpha
Helix 53	53	C	263	268	Right-handed alpha
Helix 54	54	C	281	293	Right-handed alpha
Helix 55	55	C	364	372	Right-handed alpha
Helix 56	56	C	399	401	Right-handed 310
Helix 57	57	C	410	420	Right-handed alpha
Helix 58	58	C	454	466	Right-handed alpha
Helix 59	59	C	470	474	Right-handed 310
Helix 60	60	C	493	501	Right-handed alpha

There are 18 sheets in PDB entry 4GXQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	19	23	anti-parallel
Strand 3	A	224	227	parallel
Strand 4	A	198	201	parallel
Strand 5	A	245	248	parallel
Strand 6	A	272	275	parallel
Strand 7	A	297	302	parallel
Strand 8	A	306	310	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	82	first strand
Strand 2	A	55	59	parallel
Strand 3	A	103	106	parallel
Strand 4	A	124	127	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	162	first strand
Strand 2	A	172	176	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	334	first strand
Strand 2	A	348	353	anti-parallel
Strand 3	A	378	386	anti-parallel
Strand 4	A	392	397	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	404	first strand
Strand 2	A	407	409	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	434	first strand
Strand 2	A	438	447	anti-parallel
Strand 3	A	477	481	parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	224	227	parallel
Strand 4	B	198	201	parallel
Strand 5	B	245	248	parallel
Strand 6	B	272	275	parallel
Strand 7	B	297	302	parallel
Strand 8	B	306	310	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	82	first strand
Strand 2	B	55	58	parallel
Strand 3	B	103	106	parallel
Strand 4	B	124	127	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	162	first strand
Strand 2	B	172	176	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	334	first strand
Strand 2	B	348	353	anti-parallel
Strand 3	B	378	386	anti-parallel
Strand 4	B	392	397	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	404	first strand
Strand 2	B	407	409	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	434	first strand
Strand 2	B	438	447	anti-parallel
Strand 3	B	477	480	parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	19	23	anti-parallel
Strand 3	C	224	227	parallel
Strand 4	C	198	201	parallel
Strand 5	C	245	248	parallel
Strand 6	C	272	275	parallel
Strand 7	C	297	302	parallel
Strand 8	C	306	310	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	55	59	parallel
Strand 3	C	103	106	parallel
Strand 4	C	124	127	parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	162	first strand
Strand 2	C	172	176	anti-parallel
Strand 3	C	360	361	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	334	first strand
Strand 2	C	348	353	anti-parallel
Strand 3	C	378	386	anti-parallel
Strand 4	C	392	397	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	402	404	first strand
Strand 2	C	407	409	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	424	434	first strand
Strand 2	C	438	447	anti-parallel
Strand 3	C	477	480	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GXQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GXQ