Analysis of interatomic Contacts of Structural Units in PDB entry:
4GY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GY7 entry

There are 10 chains in PDB entry 4GY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 58
A
 LEU 60LEU 138
A
 GLU 140GLU 142
A
 LEU 144ASP 206
A
 LYS 208SER 246
A
 GLY 248ASN 267
A
 PRO 269SER 328
A
 GLY 330LEU 489
A
 LEU 491VAL 591
A
 HIS 593PHE 840
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4GY7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 26Right-handed alpha
Helix 2
2
A
31 50Right-handed alpha
Helix 3
3
A
53 61Right-handed alpha
Helix 4
4
A
62 64Right-handed 310
Helix 5
5
A
66 70Right-handed 310
Helix 6
6
A
73 78Right-handed alpha
Helix 7
7
A
106 111Right-handed alpha
Helix 8
8
A
120 124Right-handed 310
Helix 9
9
A
172 176Right-handed 310
Helix 10
10
A
183 188Right-handed alpha
Helix 11
11
A
233 248Right-handed alpha
Helix 12
12
A
276 284Right-handed alpha
Helix 13
13
A
332 336Right-handed 310
Helix 14
14
A
413 422Right-handed alpha
Helix 15
15
A
435 441Right-handed alpha
Helix 16
16
A
446 457Right-handed alpha
Helix 17
17
A
475 485Right-handed alpha
Helix 18
18
A
498 513Right-handed alpha
Helix 19
19
A
528 537Right-handed alpha
Helix 20
20
A
556 563Right-handed 310
Helix 21
21
A
580 593Right-handed alpha
Helix 22
22
A
599 610Right-handed alpha
Helix 23
23
A
611 624Right-handed alpha
Helix 24
24
A
639 641Right-handed 310
Helix 25
25
A
642 659Right-handed alpha
Helix 26
26
A
669 679Right-handed alpha
Helix 27
27
A
681 689Right-handed alpha
Helix 28
28
A
709 713Right-handed 310
Helix 29
29
A
750 753Right-handed 310
Helix 30
30
A
755 760Right-handed alpha
Helix 31
31
A
766 772Right-handed alpha
Helix 32
32
A
773 779Right-handed alpha
Helix 33
33
A
794 798Right-handed 310
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There are 12 sheets in PDB entry 4GY7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 87first strand
Strand 2
A
90 97anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
290 292anti-parallel
Strand 3
A
299 301anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
273 275anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
151 159anti-parallel
Strand 3
A
207 214anti-parallel
Strand 4
A
190 192anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
151 159anti-parallel
Strand 3
A
259 261anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
199 202anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
230 231anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 368first strand
Strand 2
A
351 360anti-parallel
Strand 3
A
339 348anti-parallel
Strand 4
A
390 393parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 368first strand
Strand 2
A
351 360anti-parallel
Strand 3
A
339 348anti-parallel
Strand 4
A
398 401parallel
Strand 5
A
705 708anti-parallel
Strand 6
A
719 722anti-parallel
Strand 7
A
725 731anti-parallel
Strand 8
A
745 748anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 409first strand
Strand 2
A
424 430parallel
Strand 3
A
463 469parallel
Strand 4
A
488 492parallel
Strand 5
A
515 519parallel
Strand 6
A
541 543parallel
Strand 7
A
566 571parallel
Strand 8
A
629 631parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 409first strand
Strand 2
A
424 430parallel
Strand 3
A
463 469parallel
Strand 4
A
762 765parallel
Strand 5
A
783 786parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
807 809first strand
Strand 2
A
816 818anti-parallel
Strand 3
A
821 822anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il