Analysis of interatomic Contacts of Structural Units in PDB entry:
4GYI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GYI entry

There are 2 chains in PDB entry 4GYI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ILE 256
A
 PHE 258ARG 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 4GYI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
12 26Right-handed alpha
Helix 3
3
A
34 42Right-handed alpha
Helix 4
4
A
49 60Right-handed alpha
Helix 5
5
A
77 92Right-handed alpha
Helix 6
6
A
147 172Right-handed alpha
Helix 7
7
A
198 200Right-handed 310
Helix 8
8
A
205 223Right-handed alpha
Helix 9
9
A
268 289Right-handed alpha
Helix 10
10
A
298 304Right-handed alpha
Helix 11
11
A
313 317Right-handed 310
Helix 12
12
A
324 341Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4GYI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
72 76anti-parallel
Strand 3
A
63 67anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 104first strand
Strand 2
A
108 114anti-parallel
Strand 3
A
120 126anti-parallel
Strand 4
A
186 190anti-parallel
Strand 5
A
179 183anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
141 142anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
235 241anti-parallel
Strand 3
A
249 255anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
262 263anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il