Analysis of interatomic Contacts of Structural Units in PDB entry:
4GYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GYP entry

There are 3 chains in PDB entry 4GYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ARG 446
B
 GLN 4ARG 446
C
 SER 6GLY 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 4GYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 73Right-handed alpha
Helix 2
2
A
76 78Right-handed 310
Helix 3
3
A
79 91Right-handed alpha
Helix 4
4
A
92 96Right-handed 310
Helix 5
5
A
108 129Right-handed alpha
Helix 6
6
A
131 136Right-handed 310
Helix 7
7
A
156 160Right-handed 310
Helix 8
8
A
172 178Right-handed alpha
Helix 9
9
A
184 200Right-handed alpha
Helix 10
10
A
212 227Right-handed alpha
Helix 11
11
A
241 252Right-handed alpha
Helix 12
12
A
270 283Right-handed alpha
Helix 13
13
A
294 305Right-handed alpha
Helix 14
14
A
313 318Right-handed alpha
Helix 15
15
A
318 333Right-handed alpha
Helix 16
16
A
344 357Right-handed alpha
Helix 17
17
A
368 373Right-handed alpha
Helix 18
18
A
403 417Right-handed alpha
Helix 19
19
A
424 429Right-handed alpha
Helix 20
20
B
58 73Right-handed alpha
Helix 21
21
B
76 78Right-handed 310
Helix 22
22
B
79 91Right-handed alpha
Helix 23
23
B
92 96Right-handed 310
Helix 24
24
B
108 129Right-handed alpha
Helix 25
25
B
131 136Right-handed 310
Helix 26
26
B
156 160Right-handed 310
Helix 27
27
B
172 178Right-handed alpha
Helix 28
28
B
184 200Right-handed alpha
Helix 29
29
B
212 227Right-handed alpha
Helix 30
30
B
241 252Right-handed alpha
Helix 31
31
B
270 283Right-handed alpha
Helix 32
32
B
294 305Right-handed alpha
Helix 33
33
B
313 318Right-handed alpha
Helix 34
34
B
318 333Right-handed alpha
Helix 35
35
B
344 357Right-handed alpha
Helix 36
36
B
368 373Right-handed alpha
Helix 37
37
B
403 417Right-handed alpha
Helix 38
38
B
424 429Right-handed alpha
Helix 39
39
C
57 67Right-handed alpha
Helix 40
40
C
67 72Right-handed alpha
Helix 41
41
C
75 77Right-handed 310
Helix 42
42
C
78 91Right-handed alpha
Helix 43
43
C
107 128Right-handed alpha
Helix 44
44
C
130 135Right-handed 310
Helix 45
45
C
155 159Right-handed 310
Helix 46
46
C
172 177Right-handed alpha
Helix 47
47
C
183 199Right-handed alpha
Helix 48
48
C
211 226Right-handed alpha
Helix 49
49
C
240 248Right-handed alpha
Helix 50
50
C
269 282Right-handed alpha
Helix 51
51
C
293 303Right-handed alpha
Helix 52
52
C
312 317Right-handed alpha
Helix 53
53
C
317 331Right-handed alpha
Helix 54
54
C
343 356Right-handed alpha
Helix 55
55
C
367 372Right-handed alpha
Helix 56
56
C
402 415Right-handed alpha
Helix 57
57
C
423 431Right-handed alpha
Helix 58
58
D
57 72Right-handed alpha
Helix 59
59
D
75 77Right-handed 310
Helix 60
60
D
78 100Right-handed alpha
Helix 61
61
D
103 107Right-handed 310
Helix 62
62
D
108 128Right-handed alpha
Helix 63
63
D
130 135Right-handed 310
Helix 64
64
D
155 159Right-handed 310
Helix 65
65
D
172 177Right-handed alpha
Helix 66
66
D
183 199Right-handed alpha
Helix 67
67
D
211 226Right-handed alpha
Helix 68
68
D
240 248Right-handed alpha
Helix 69
69
D
269 282Right-handed alpha
Helix 70
70
D
293 303Right-handed alpha
Helix 71
71
D
312 317Right-handed alpha
Helix 72
72
D
317 332Right-handed alpha
Helix 73
73
D
343 356Right-handed alpha
Helix 74
74
D
367 372Right-handed alpha
Helix 75
75
D
402 416Right-handed alpha
Helix 76
76
D
423 431Right-handed alpha
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There are 18 sheets in PDB entry 4GYP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 21first strand
Strand 2
A
35 45anti-parallel
Strand 3
A
50 56anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
30 31anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
389 391anti-parallel
Strand 3
A
385 386anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
204 207parallel
Strand 3
A
232 235parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
286 288parallel
Strand 3
A
309 310parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 21first strand
Strand 2
B
35 45anti-parallel
Strand 3
B
50 56anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
30 31anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 146first strand
Strand 2
B
389 391anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
204 207parallel
Strand 3
B
232 235parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
286 288parallel
Strand 3
B
309 310parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 20first strand
Strand 2
C
34 44anti-parallel
Strand 3
C
49 55anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 26first strand
Strand 2
C
29 30anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 145first strand
Strand 2
C
388 390anti-parallel
Strand 3
C
384 385anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 150first strand
Strand 2
C
202 206parallel
Strand 3
C
230 234parallel
Strand 4
C
257 259parallel
Strand 5
C
285 287parallel
Strand 6
C
308 309parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 20first strand
Strand 2
D
34 44anti-parallel
Strand 3
D
49 55anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 26first strand
Strand 2
D
29 30anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
143 145first strand
Strand 2
D
388 390anti-parallel
Strand 3
D
384 385anti-parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
148 150first strand
Strand 2
D
202 206parallel
Strand 3
D
230 234parallel
Strand 4
D
257 259parallel
Strand 5
D
285 287parallel
Strand 6
D
308 309parallel
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