Analysis of interatomic Contacts of Structural Units in PDB entry:
4GYZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GYZ entry

There are 6 chains in PDB entry 4GYZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 123	LEU 370
B	SER 121	VAL 369
C	SER 122	VAL 369
D	SER 122	VAL 369
E	SER 122	LEU 370
F	SER 122	LEU 150

There are 56 helices in PDB entry 4GYZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	138	154	Right-handed alpha
Helix 2	2	A	164	175	Right-handed alpha
Helix 3	3	A	243	261	Right-handed alpha
Helix 4	4	A	279	284	Right-handed alpha
Helix 5	5	A	293	297	Right-handed alpha
Helix 6	6	A	300	304	Right-handed 310
Helix 7	7	B	138	154	Right-handed alpha
Helix 8	8	B	164	175	Right-handed alpha
Helix 9	9	B	243	261	Right-handed alpha
Helix 10	10	B	278	283	Right-handed alpha
Helix 11	11	B	293	297	Right-handed alpha
Helix 12	12	C	138	154	Right-handed alpha
Helix 13	13	C	164	175	Right-handed alpha
Helix 14	14	C	240	242	Right-handed 310
Helix 15	15	C	243	261	Right-handed alpha
Helix 16	16	C	278	283	Right-handed alpha
Helix 17	17	C	293	297	Right-handed alpha
Helix 18	18	C	300	304	Right-handed 310
Helix 19	19	D	138	154	Right-handed alpha
Helix 20	20	D	164	175	Right-handed alpha
Helix 21	21	D	240	242	Right-handed 310
Helix 22	22	D	243	261	Right-handed alpha
Helix 23	23	D	279	284	Right-handed alpha
Helix 24	24	D	293	297	Right-handed alpha
Helix 25	25	E	138	154	Right-handed alpha
Helix 26	26	E	164	175	Right-handed alpha
Helix 27	27	E	240	242	Right-handed 310
Helix 28	28	E	243	259	Right-handed alpha
Helix 29	29	E	278	283	Right-handed alpha
Helix 30	30	E	293	297	Right-handed alpha
Helix 31	31	E	332	335	Right-handed 310
Helix 32	32	F	138	154	Right-handed alpha
Helix 33	33	F	164	175	Right-handed alpha
Helix 34	34	F	243	258	Right-handed alpha
Helix 35	35	F	278	283	Right-handed alpha
Helix 36	36	F	293	297	Right-handed alpha
Helix 37	37	F	300	304	Right-handed 310
Helix 38	38	G	138	154	Right-handed alpha
Helix 39	39	G	164	175	Right-handed alpha
Helix 40	40	G	243	259	Right-handed alpha
Helix 41	41	G	278	283	Right-handed alpha
Helix 42	42	G	293	297	Right-handed alpha
Helix 43	43	G	300	304	Right-handed 310
Helix 44	44	H	138	154	Right-handed alpha
Helix 45	45	H	164	175	Right-handed alpha
Helix 46	46	H	240	242	Right-handed 310
Helix 47	47	H	243	261	Right-handed alpha
Helix 48	48	H	278	284	Right-handed alpha
Helix 49	49	H	293	297	Right-handed alpha
Helix 50	50	H	300	304	Right-handed 310
Helix 51	51	I	138	154	Right-handed alpha
Helix 52	52	I	164	175	Right-handed alpha
Helix 53	53	I	243	261	Right-handed alpha
Helix 54	54	I	278	284	Right-handed alpha
Helix 55	55	I	293	297	Right-handed alpha
Helix 56	56	I	300	304	Right-handed 310

There are 26 sheets in PDB entry 4GYZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	182	first strand
Strand 2	A	189	195	anti-parallel
Strand 3	A	157	163	anti-parallel
Strand 4	A	124	130	parallel
Strand 5	A	361	368	anti-parallel
Strand 6	A	337	345	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	208	first strand
Strand 2	A	217	225	anti-parallel
Strand 3	A	228	234	anti-parallel
Strand 4	A	266	272	parallel
Strand 5	A	326	331	anti-parallel
Strand 6	A	290	292	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	322	323	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	182	first strand
Strand 2	B	189	195	anti-parallel
Strand 3	B	157	163	anti-parallel
Strand 4	B	122	130	parallel
Strand 5	B	361	368	anti-parallel
Strand 6	B	337	345	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	208	first strand
Strand 2	B	217	225	anti-parallel
Strand 3	B	228	234	anti-parallel
Strand 4	B	266	272	parallel
Strand 5	B	326	331	anti-parallel
Strand 6	B	290	292	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	322	323	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	182	first strand
Strand 2	C	189	195	anti-parallel
Strand 3	C	157	163	anti-parallel
Strand 4	C	123	130	parallel
Strand 5	C	361	368	anti-parallel
Strand 6	C	337	345	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	208	first strand
Strand 2	C	217	225	anti-parallel
Strand 3	C	228	235	anti-parallel
Strand 4	C	266	272	parallel
Strand 5	C	326	331	anti-parallel
Strand 6	C	290	292	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	308	first strand
Strand 2	C	322	323	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	182	first strand
Strand 2	D	189	195	anti-parallel
Strand 3	D	157	163	anti-parallel
Strand 4	D	123	130	parallel
Strand 5	D	361	368	anti-parallel
Strand 6	D	337	345	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	208	first strand
Strand 2	D	217	225	anti-parallel
Strand 3	D	228	234	anti-parallel
Strand 4	D	266	272	parallel
Strand 5	D	326	331	anti-parallel
Strand 6	D	290	292	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	182	first strand
Strand 2	E	189	195	anti-parallel
Strand 3	E	157	163	anti-parallel
Strand 4	E	124	130	parallel
Strand 5	E	361	368	anti-parallel
Strand 6	E	337	345	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	208	first strand
Strand 2	E	217	225	anti-parallel
Strand 3	E	228	234	anti-parallel
Strand 4	E	266	272	parallel
Strand 5	E	326	331	anti-parallel
Strand 6	E	291	292	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	307	308	first strand
Strand 2	E	322	323	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	181	first strand
Strand 2	F	189	195	anti-parallel
Strand 3	F	157	163	anti-parallel
Strand 4	F	124	130	parallel
Strand 5	F	361	366	anti-parallel
Strand 6	F	339	345	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	208	first strand
Strand 2	F	217	225	anti-parallel
Strand 3	F	228	235	anti-parallel
Strand 4	F	265	272	parallel
Strand 5	F	326	331	anti-parallel
Strand 6	F	290	292	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	307	308	first strand
Strand 2	F	322	323	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	182	first strand
Strand 2	G	189	195	anti-parallel
Strand 3	G	157	163	anti-parallel
Strand 4	G	124	130	parallel
Strand 5	G	361	367	anti-parallel
Strand 6	G	338	345	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	208	first strand
Strand 2	G	217	225	anti-parallel
Strand 3	G	228	235	anti-parallel
Strand 4	G	266	272	parallel
Strand 5	G	326	331	anti-parallel
Strand 6	G	291	292	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	307	308	first strand
Strand 2	G	322	323	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	178	182	first strand
Strand 2	H	189	195	anti-parallel
Strand 3	H	157	163	anti-parallel
Strand 4	H	124	130	parallel
Strand 5	H	361	368	anti-parallel
Strand 6	H	337	345	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	200	208	first strand
Strand 2	H	217	225	anti-parallel
Strand 3	H	228	235	anti-parallel
Strand 4	H	266	272	parallel
Strand 5	H	326	331	anti-parallel
Strand 6	H	290	292	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	307	308	first strand
Strand 2	H	322	323	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	178	182	first strand
Strand 2	I	189	195	anti-parallel
Strand 3	I	157	163	anti-parallel
Strand 4	I	124	130	parallel
Strand 5	I	361	367	anti-parallel
Strand 6	I	338	345	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	200	208	first strand
Strand 2	I	217	225	anti-parallel
Strand 3	I	228	234	anti-parallel
Strand 4	I	266	272	parallel
Strand 5	I	326	331	anti-parallel
Strand 6	I	290	292	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	307	308	first strand
Strand 2	I	322	323	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GYZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GYZ