Analysis of interatomic Contacts of Structural Units in PDB entry:
4GZ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GZ0 entry

There are 9 chains in PDB entry 4GZ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 121	LEU 370
B	SER 121	LEU 370
C	C 2	G 10
D	C 2	G 10
E	SER 121	LEU 370
F	C 2	G 10
K	SER 122	LEU 370
L	C 2	G 10
G	SER 122	ASN 274

There are 42 helices in PDB entry 4GZ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	138	154	Right-handed alpha
Helix 2	2	A	164	175	Right-handed alpha
Helix 3	3	A	240	242	Right-handed 310
Helix 4	4	A	243	261	Right-handed alpha
Helix 5	5	A	276	283	Right-handed alpha
Helix 6	6	A	293	297	Right-handed alpha
Helix 7	7	A	300	304	Right-handed 310
Helix 8	8	B	138	154	Right-handed alpha
Helix 9	9	B	164	175	Right-handed alpha
Helix 10	10	B	240	242	Right-handed 310
Helix 11	11	B	243	261	Right-handed alpha
Helix 12	12	B	276	284	Right-handed alpha
Helix 13	13	B	293	297	Right-handed alpha
Helix 14	14	B	300	304	Right-handed 310
Helix 15	15	E	138	154	Right-handed alpha
Helix 16	16	E	164	175	Right-handed alpha
Helix 17	17	E	240	242	Right-handed 310
Helix 18	18	E	243	261	Right-handed alpha
Helix 19	19	E	276	284	Right-handed alpha
Helix 20	20	E	293	297	Right-handed alpha
Helix 21	21	E	300	304	Right-handed 310
Helix 22	22	K	138	154	Right-handed alpha
Helix 23	23	K	164	175	Right-handed alpha
Helix 24	24	K	240	242	Right-handed 310
Helix 25	25	K	243	260	Right-handed alpha
Helix 26	26	K	276	283	Right-handed alpha
Helix 27	27	K	293	297	Right-handed alpha
Helix 28	28	K	300	304	Right-handed 310
Helix 29	29	G	138	154	Right-handed alpha
Helix 30	30	G	164	175	Right-handed alpha
Helix 31	31	G	240	242	Right-handed 310
Helix 32	32	G	243	260	Right-handed alpha
Helix 33	33	G	276	283	Right-handed alpha
Helix 34	34	G	293	297	Right-handed alpha
Helix 35	35	G	300	304	Right-handed 310
Helix 36	36	I	138	154	Right-handed alpha
Helix 37	37	I	164	175	Right-handed alpha
Helix 38	38	I	240	242	Right-handed 310
Helix 39	39	I	243	261	Right-handed alpha
Helix 40	40	I	276	284	Right-handed alpha
Helix 41	41	I	293	297	Right-handed alpha
Helix 42	42	I	300	304	Right-handed 310

There are 18 sheets in PDB entry 4GZ0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	182	first strand
Strand 2	A	189	195	anti-parallel
Strand 3	A	157	163	anti-parallel
Strand 4	A	123	130	parallel
Strand 5	A	361	368	anti-parallel
Strand 6	A	337	345	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	208	first strand
Strand 2	A	217	225	anti-parallel
Strand 3	A	228	234	anti-parallel
Strand 4	A	266	272	parallel
Strand 5	A	326	331	anti-parallel
Strand 6	A	291	292	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	322	323	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	182	first strand
Strand 2	B	189	195	anti-parallel
Strand 3	B	157	163	anti-parallel
Strand 4	B	123	130	parallel
Strand 5	B	361	368	anti-parallel
Strand 6	B	337	345	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	208	first strand
Strand 2	B	217	225	anti-parallel
Strand 3	B	228	235	anti-parallel
Strand 4	B	266	272	parallel
Strand 5	B	326	331	anti-parallel
Strand 6	B	291	292	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	322	323	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	182	first strand
Strand 2	E	189	195	anti-parallel
Strand 3	E	157	163	anti-parallel
Strand 4	E	123	130	parallel
Strand 5	E	361	368	anti-parallel
Strand 6	E	337	345	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	208	first strand
Strand 2	E	217	225	anti-parallel
Strand 3	E	228	235	anti-parallel
Strand 4	E	266	272	parallel
Strand 5	E	326	331	anti-parallel
Strand 6	E	291	292	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	307	308	first strand
Strand 2	E	322	323	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	178	182	first strand
Strand 2	K	189	195	anti-parallel
Strand 3	K	157	163	anti-parallel
Strand 4	K	123	130	parallel
Strand 5	K	361	368	anti-parallel
Strand 6	K	337	345	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	199	208	first strand
Strand 2	K	217	225	anti-parallel
Strand 3	K	228	235	anti-parallel
Strand 4	K	266	272	parallel
Strand 5	K	326	331	anti-parallel
Strand 6	K	291	292	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	307	308	first strand
Strand 2	K	322	323	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	182	first strand
Strand 2	G	189	195	anti-parallel
Strand 3	G	157	163	anti-parallel
Strand 4	G	123	130	parallel
Strand 5	G	361	368	anti-parallel
Strand 6	G	337	345	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	208	first strand
Strand 2	G	217	225	anti-parallel
Strand 3	G	228	235	anti-parallel
Strand 4	G	266	272	parallel
Strand 5	G	326	331	anti-parallel
Strand 6	G	290	292	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	307	308	first strand
Strand 2	G	322	323	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	178	182	first strand
Strand 2	I	189	195	anti-parallel
Strand 3	I	157	163	anti-parallel
Strand 4	I	124	130	parallel
Strand 5	I	361	368	anti-parallel
Strand 6	I	337	345	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	199	208	first strand
Strand 2	I	217	225	anti-parallel
Strand 3	I	228	235	anti-parallel
Strand 4	I	266	272	parallel
Strand 5	I	326	331	anti-parallel
Strand 6	I	291	292	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	307	308	first strand
Strand 2	I	322	323	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GZ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GZ0