Analysis of interatomic Contacts of Structural Units in PDB entry:
4GZ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GZ1 entry

There are 4 chains in PDB entry 4GZ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 116LEU 370
B
 THR 123LEU 370
C
 C 1 G 9
D
 C 1 G 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 4GZ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
118 121Right-handed 310
Helix 2
2
A
138 154Right-handed alpha
Helix 3
3
A
164 175Right-handed alpha
Helix 4
4
A
240 242Right-handed 310
Helix 5
5
A
243 261Right-handed alpha
Helix 6
6
A
276 284Right-handed alpha
Helix 7
7
A
293 297Right-handed alpha
Helix 8
8
A
300 304Right-handed 310
Helix 9
9
B
138 154Right-handed alpha
Helix 10
10
B
164 175Right-handed alpha
Helix 11
11
B
240 242Right-handed 310
Helix 12
12
B
243 261Right-handed alpha
Helix 13
13
B
276 284Right-handed alpha
Helix 14
14
B
293 297Right-handed alpha
Helix 15
15
B
300 304Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 4GZ1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 182first strand
Strand 2
A
189 195anti-parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
123 130parallel
Strand 5
A
361 368anti-parallel
Strand 6
A
337 345anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 208first strand
Strand 2
A
217 225anti-parallel
Strand 3
A
228 234anti-parallel
Strand 4
A
266 272parallel
Strand 5
A
326 331anti-parallel
Strand 6
A
290 292anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
322 323anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 182first strand
Strand 2
B
189 195anti-parallel
Strand 3
B
157 163anti-parallel
Strand 4
B
124 130parallel
Strand 5
B
361 367anti-parallel
Strand 6
B
338 345anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 208first strand
Strand 2
B
217 225anti-parallel
Strand 3
B
228 234anti-parallel
Strand 4
B
266 272parallel
Strand 5
B
326 331anti-parallel
Strand 6
B
291 292anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
322 323anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il