Analysis of interatomic Contacts of Structural Units in PDB entry:
4GZK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GZK entry

There is 1 chain in PDB entry 4GZK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 10VAL 659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4GZK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 29Right-handed 310
Helix 2
2
A
36 41Right-handed alpha
Helix 3
3
A
43 49Right-handed alpha
Helix 4
4
A
59 65Right-handed 310
Helix 5
5
A
91 109Right-handed alpha
Helix 6
6
A
127 130Right-handed 310
Helix 7
7
A
148 155Right-handed alpha
Helix 8
8
A
162 178Right-handed alpha
Helix 9
9
A
201 213Right-handed alpha
Helix 10
10
A
216 227Right-handed alpha
Helix 11
11
A
229 238Right-handed alpha
Helix 12
12
A
262 269Right-handed alpha
Helix 13
13
A
303 325Right-handed alpha
Helix 14
14
A
325 330Right-handed alpha
Helix 15
15
A
332 334Right-handed 310
Helix 16
16
A
335 340Right-handed alpha
Helix 17
17
A
353 357Right-handed 310
Helix 18
18
A
358 370Right-handed alpha
Helix 19
19
A
374 386Right-handed alpha
Helix 20
20
A
405 409Right-handed 310
Helix 21
21
A
424 445Right-handed alpha
Helix 22
22
A
451 457Right-handed alpha
Helix 23
23
A
477 491Right-handed alpha
Helix 24
24
A
492 496Right-handed 310
Helix 25
25
A
528 536Right-handed alpha
Helix 26
26
A
549 559Right-handed alpha
Helix 27
27
A
560 562Right-handed 310
Helix 28
28
A
563 581Right-handed alpha
Helix 29
29
A
581 586Right-handed alpha
Helix 30
30
A
587 598Right-handed alpha
Helix 31
31
A
602 606Right-handed 310
Helix 32
32
A
607 616Right-handed alpha
Helix 33
33
A
617 621Right-handed 310
Helix 34
34
A
625 629Right-handed 310
Helix 35
35
A
630 637Right-handed alpha
Helix 36
36
A
642 645Right-handed 310
Helix 37
37
A
646 654Right-handed alpha
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There are 9 sheets in PDB entry 4GZK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
87 88anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 137first strand
Strand 2
A
292 301parallel
Strand 3
A
244 250anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
657 658parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
A
638 641anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
275 276anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
286 287anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 467first strand
Strand 2
A
470 475anti-parallel
Strand 3
A
344 351anti-parallel
Strand 4
A
499 502anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 391first strand
Strand 2
A
401 403anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 508first strand
Strand 2
A
511 517anti-parallel
Strand 3
A
520 525anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il