Analysis of interatomic Contacts of Structural Units in PDB entry:
4GZU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GZU entry

There are 2 chains in PDB entry 4GZU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 535SER 1026
B
 ASP 537ALA 1025
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4GZU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
535 562Right-handed alpha
Helix 2
2
A
562 572Right-handed alpha
Helix 3
3
A
575 584Right-handed alpha
Helix 4
4
A
586 608Right-handed alpha
Helix 5
5
A
622 634Right-handed alpha
Helix 6
6
A
636 641Right-handed alpha
Helix 7
7
A
642 657Right-handed alpha
Helix 8
8
A
657 668Right-handed alpha
Helix 9
9
A
676 699Right-handed alpha
Helix 10
10
A
708 726Right-handed alpha
Helix 11
11
A
726 746Right-handed alpha
Helix 12
12
A
839 857Right-handed alpha
Helix 13
13
A
908 915Right-handed alpha
Helix 14
14
A
922 929Right-handed alpha
Helix 15
15
A
1012 1024Right-handed alpha
Helix 16
16
B
538 562Right-handed alpha
Helix 17
17
B
562 569Right-handed alpha
Helix 18
18
B
580 584Right-handed alpha
Helix 19
19
B
586 608Right-handed alpha
Helix 20
20
B
623 630Right-handed alpha
Helix 21
21
B
636 642Right-handed alpha
Helix 22
22
B
642 647Right-handed alpha
Helix 23
23
B
648 656Right-handed alpha
Helix 24
24
B
658 668Right-handed alpha
Helix 25
25
B
676 699Right-handed alpha
Helix 26
26
B
706 726Right-handed alpha
Helix 27
27
B
726 746Right-handed alpha
Helix 28
28
B
818 821Right-handed 310
Helix 29
29
B
839 855Right-handed alpha
Helix 30
30
B
908 917Right-handed alpha
Helix 31
31
B
922 929Right-handed alpha
Helix 32
32
B
989 993Right-handed 310
Helix 33
33
B
1011 1024Right-handed alpha
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There are 6 sheets in PDB entry 4GZU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
800 805first strand
Strand 2
A
784 788anti-parallel
Strand 3
A
773 781anti-parallel
Strand 4
A
759 768anti-parallel
Strand 5
A
832 836anti-parallel
Strand 6
A
823 827anti-parallel
Strand 7
A
810 813anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
800 805first strand
Strand 2
A
784 788anti-parallel
Strand 3
A
773 781anti-parallel
Strand 4
A
759 768anti-parallel
Strand 5
A
919 921anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
972 975first strand
Strand 2
A
958 962anti-parallel
Strand 3
A
948 955anti-parallel
Strand 4
A
933 939anti-parallel
Strand 5
A
1003 1008anti-parallel
Strand 6
A
995 1000anti-parallel
Strand 7
A
980 982anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
800 803first strand
Strand 2
B
785 788anti-parallel
Strand 3
B
775 781anti-parallel
Strand 4
B
759 767anti-parallel
Strand 5
B
832 836anti-parallel
Strand 6
B
823 827anti-parallel
Strand 7
B
810 813anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
800 803first strand
Strand 2
B
785 788anti-parallel
Strand 3
B
775 781anti-parallel
Strand 4
B
759 767anti-parallel
Strand 5
B
919 921anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
973 975first strand
Strand 2
B
958 962anti-parallel
Strand 3
B
949 955anti-parallel
Strand 4
B
933 940anti-parallel
Strand 5
B
1003 1008anti-parallel
Strand 6
B
995 1000anti-parallel
Strand 7
B
980 982anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il