Analysis of interatomic Contacts of Structural Units in PDB entry:
4H17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4H17 entry

There are 2 chains in PDB entry 4H17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ILE 196
B
 VAL 3ILE 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4H17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 11Right-handed alpha
Helix 2
2
A
19 21Right-handed 310
Helix 3
3
A
31 40Right-handed 310
Helix 4
4
A
43 61Right-handed alpha
Helix 5
5
A
82 86Right-handed 310
Helix 6
6
A
112 121Right-handed alpha
Helix 7
7
A
134 146Right-handed alpha
Helix 8
8
A
170 186Right-handed alpha
Helix 9
9
A
191 195Right-handed 310
Helix 10
10
B
6 11Right-handed alpha
Helix 11
11
B
19 23Right-handed 310
Helix 12
12
B
31 36Right-handed 310
Helix 13
13
B
43 61Right-handed alpha
Helix 14
14
B
82 86Right-handed 310
Helix 15
15
B
112 121Right-handed alpha
Helix 16
16
B
134 146Right-handed alpha
Helix 17
17
B
170 186Right-handed alpha
Helix 18
18
B
191 195Right-handed 310
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There are 4 sheets in PDB entry 4H17. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
65 70parallel
Strand 3
A
23 28parallel
Strand 4
A
124 130parallel
Strand 5
A
149 158parallel
Strand 6
A
188 190parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
167 169anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 102first strand
Strand 2
B
65 70parallel
Strand 3
B
24 28parallel
Strand 4
B
124 130parallel
Strand 5
B
149 158parallel
Strand 6
B
188 190parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 164first strand
Strand 2
B
167 169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il