Analysis of interatomic Contacts of Structural Units in PDB entry:
4H41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4H41 entry

There are 2 chains in PDB entry 4H41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 46LYS 366
B
 PRO 39PRO 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 4H41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 92Right-handed alpha
Helix 2
2
A
112 118Right-handed alpha
Helix 3
3
A
126 138Right-handed alpha
Helix 4
4
A
150 156Right-handed alpha
Helix 5
5
A
157 160Right-handed 310
Helix 6
6
A
161 176Right-handed alpha
Helix 7
7
A
198 214Right-handed alpha
Helix 8
8
A
244 260Right-handed alpha
Helix 9
9
A
274 276Right-handed 310
Helix 10
10
A
277 292Right-handed alpha
Helix 11
11
A
315 329Right-handed alpha
Helix 12
12
A
338 343Right-handed alpha
Helix 13
13
A
350 364Right-handed alpha
Helix 14
14
B
78 92Right-handed alpha
Helix 15
15
B
112 118Right-handed alpha
Helix 16
16
B
126 138Right-handed alpha
Helix 17
17
B
150 156Right-handed alpha
Helix 18
18
B
157 160Right-handed 310
Helix 19
19
B
161 176Right-handed alpha
Helix 20
20
B
198 214Right-handed alpha
Helix 21
21
B
244 260Right-handed alpha
Helix 22
22
B
274 276Right-handed 310
Helix 23
23
B
277 293Right-handed alpha
Helix 24
24
B
315 329Right-handed alpha
Helix 25
25
B
338 343Right-handed alpha
Helix 26
26
B
349 364Right-handed alpha
Helix 27
27
C
78 92Right-handed alpha
Helix 28
28
C
112 118Right-handed alpha
Helix 29
29
C
126 138Right-handed alpha
Helix 30
30
C
150 156Right-handed alpha
Helix 31
31
C
157 160Right-handed 310
Helix 32
32
C
161 176Right-handed alpha
Helix 33
33
C
198 214Right-handed alpha
Helix 34
34
C
244 260Right-handed alpha
Helix 35
35
C
274 276Right-handed 310
Helix 36
36
C
277 293Right-handed alpha
Helix 37
37
C
315 329Right-handed alpha
Helix 38
38
C
338 343Right-handed alpha
Helix 39
39
C
350 364Right-handed alpha
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There are 6 sheets in PDB entry 4H41. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
96 99parallel
Strand 3
A
141 145parallel
Strand 4
A
183 188parallel
Strand 5
A
219 221parallel
Strand 6
A
265 269parallel
Strand 7
A
295 299parallel
Strand 8
A
333 336parallel
Strand 9
A
60 65parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
107 108anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 65first strand
Strand 2
B
96 99parallel
Strand 3
B
141 145parallel
Strand 4
B
183 188parallel
Strand 5
B
219 221parallel
Strand 6
B
265 269parallel
Strand 7
B
295 299parallel
Strand 8
B
333 336parallel
Strand 9
B
60 65parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
107 108anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 65first strand
Strand 2
C
96 99parallel
Strand 3
C
141 145parallel
Strand 4
C
183 188parallel
Strand 5
C
219 221parallel
Strand 6
C
265 269parallel
Strand 7
C
295 299parallel
Strand 8
C
333 336parallel
Strand 9
C
60 65parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 104first strand
Strand 2
C
107 108anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il