Analysis of interatomic Contacts of Structural Units in PDB entry:
4H6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4H6D entry

There are 8 chains in PDB entry 4H6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	ASP 4	LEU 338
A	ASP 4	LEU 338
B	ASP 4	LEU 338
C	ASP 4	LEU 338
D	ASP 4	LEU 338
E	ASP 4	PHE 333
G	ASP 4	LEU 338
H	ASP 4	ARG 335

There are157 helices in PDB entry 4H6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	F	15	17	Right-handed 310
Helix 2	2	F	18	27	Right-handed alpha
Helix 3	3	F	30	34	Right-handed 310
Helix 4	4	F	44	46	Right-handed 310
Helix 5	5	F	47	54	Right-handed alpha
Helix 6	6	F	64	73	Right-handed alpha
Helix 7	7	F	102	107	Right-handed 310
Helix 8	8	F	115	126	Right-handed alpha
Helix 9	9	F	127	130	Right-handed 310
Helix 10	10	F	144	151	Right-handed alpha
Helix 11	11	F	163	175	Right-handed alpha
Helix 12	12	F	178	180	Right-handed 310
Helix 13	13	F	195	199	Right-handed 310
Helix 14	14	F	207	213	Right-handed alpha
Helix 15	15	F	213	234	Right-handed alpha
Helix 16	16	F	234	246	Right-handed alpha
Helix 17	17	F	247	250	Right-handed 310
Helix 18	18	F	251	263	Right-handed alpha
Helix 19	19	F	272	286	Right-handed alpha
Helix 20	20	F	312	331	Right-handed alpha
Helix 21	21	A	15	17	Right-handed 310
Helix 22	22	A	18	27	Right-handed alpha
Helix 23	23	A	30	34	Right-handed 310
Helix 24	24	A	44	46	Right-handed 310
Helix 25	25	A	47	54	Right-handed alpha
Helix 26	26	A	64	73	Right-handed alpha
Helix 27	27	A	102	107	Right-handed 310
Helix 28	28	A	116	126	Right-handed alpha
Helix 29	29	A	127	130	Right-handed 310
Helix 30	30	A	144	151	Right-handed alpha
Helix 31	31	A	163	175	Right-handed alpha
Helix 32	32	A	178	180	Right-handed 310
Helix 33	33	A	195	199	Right-handed 310
Helix 34	34	A	207	213	Right-handed alpha
Helix 35	35	A	213	234	Right-handed alpha
Helix 36	36	A	234	246	Right-handed alpha
Helix 37	37	A	247	250	Right-handed 310
Helix 38	38	A	251	263	Right-handed alpha
Helix 39	39	A	272	286	Right-handed alpha
Helix 40	40	A	313	321	Right-handed alpha
Helix 41	41	B	15	17	Right-handed 310
Helix 42	42	B	18	27	Right-handed alpha
Helix 43	43	B	30	34	Right-handed 310
Helix 44	44	B	46	54	Right-handed alpha
Helix 45	45	B	64	73	Right-handed alpha
Helix 46	46	B	102	107	Right-handed 310
Helix 47	47	B	116	126	Right-handed alpha
Helix 48	48	B	127	130	Right-handed 310
Helix 49	49	B	144	151	Right-handed alpha
Helix 50	50	B	163	175	Right-handed alpha
Helix 51	51	B	178	180	Right-handed 310
Helix 52	52	B	195	199	Right-handed 310
Helix 53	53	B	207	213	Right-handed alpha
Helix 54	54	B	213	234	Right-handed alpha
Helix 55	55	B	234	246	Right-handed alpha
Helix 56	56	B	247	250	Right-handed 310
Helix 57	57	B	251	263	Right-handed alpha
Helix 58	58	B	272	286	Right-handed alpha
Helix 59	59	B	312	331	Right-handed alpha
Helix 60	60	C	15	17	Right-handed 310
Helix 61	61	C	18	27	Right-handed alpha
Helix 62	62	C	30	34	Right-handed 310
Helix 63	63	C	46	54	Right-handed alpha
Helix 64	64	C	64	73	Right-handed alpha
Helix 65	65	C	102	107	Right-handed 310
Helix 66	66	C	116	126	Right-handed alpha
Helix 67	67	C	127	130	Right-handed 310
Helix 68	68	C	144	151	Right-handed alpha
Helix 69	69	C	163	175	Right-handed alpha
Helix 70	70	C	178	180	Right-handed 310
Helix 71	71	C	187	192	Right-handed alpha
Helix 72	72	C	195	199	Right-handed 310
Helix 73	73	C	207	213	Right-handed alpha
Helix 74	74	C	213	234	Right-handed alpha
Helix 75	75	C	234	246	Right-handed alpha
Helix 76	76	C	247	250	Right-handed 310
Helix 77	77	C	251	263	Right-handed alpha
Helix 78	78	C	272	286	Right-handed alpha
Helix 79	79	C	312	331	Right-handed alpha
Helix 80	80	D	15	17	Right-handed 310
Helix 81	81	D	18	27	Right-handed alpha
Helix 82	82	D	30	34	Right-handed 310
Helix 83	83	D	44	46	Right-handed 310
Helix 84	84	D	47	54	Right-handed alpha
Helix 85	85	D	64	73	Right-handed alpha
Helix 86	86	D	102	107	Right-handed 310
Helix 87	87	D	116	126	Right-handed alpha
Helix 88	88	D	127	130	Right-handed 310
Helix 89	89	D	144	151	Right-handed alpha
Helix 90	90	D	163	175	Right-handed alpha
Helix 91	91	D	178	180	Right-handed 310
Helix 92	92	D	195	199	Right-handed 310
Helix 93	93	D	207	213	Right-handed alpha
Helix 94	94	D	213	234	Right-handed alpha
Helix 95	95	D	234	246	Right-handed alpha
Helix 96	96	D	247	250	Right-handed 310
Helix 97	97	D	251	263	Right-handed alpha
Helix 98	98	D	272	286	Right-handed alpha
Helix 99	99	D	312	331	Right-handed alpha
Helix 100	100	E	15	17	Right-handed 310
Helix 101	101	E	18	27	Right-handed alpha
Helix 102	102	E	30	34	Right-handed 310
Helix 103	103	E	44	46	Right-handed 310
Helix 104	104	E	47	54	Right-handed alpha
Helix 105	105	E	64	73	Right-handed alpha
Helix 106	106	E	102	107	Right-handed 310
Helix 107	107	E	116	126	Right-handed alpha
Helix 108	108	E	127	130	Right-handed 310
Helix 109	109	E	144	151	Right-handed alpha
Helix 110	110	E	163	175	Right-handed alpha
Helix 111	111	E	178	180	Right-handed 310
Helix 112	112	E	195	199	Right-handed 310
Helix 113	113	E	207	213	Right-handed alpha
Helix 114	114	E	213	234	Right-handed alpha
Helix 115	115	E	234	246	Right-handed alpha
Helix 116	116	E	247	250	Right-handed 310
Helix 117	117	E	251	263	Right-handed alpha
Helix 118	118	E	272	286	Right-handed alpha
Helix 119	119	G	15	17	Right-handed 310
Helix 120	120	G	18	27	Right-handed alpha
Helix 121	121	G	30	34	Right-handed 310
Helix 122	122	G	46	54	Right-handed alpha
Helix 123	123	G	64	73	Right-handed alpha
Helix 124	124	G	102	107	Right-handed 310
Helix 125	125	G	116	126	Right-handed alpha
Helix 126	126	G	127	130	Right-handed 310
Helix 127	127	G	144	151	Right-handed alpha
Helix 128	128	G	163	175	Right-handed alpha
Helix 129	129	G	178	180	Right-handed 310
Helix 130	130	G	195	199	Right-handed 310
Helix 131	131	G	207	213	Right-handed alpha
Helix 132	132	G	213	234	Right-handed alpha
Helix 133	133	G	234	246	Right-handed alpha
Helix 134	134	G	247	250	Right-handed 310
Helix 135	135	G	251	263	Right-handed alpha
Helix 136	136	G	272	286	Right-handed alpha
Helix 137	137	G	312	331	Right-handed alpha
Helix 138	138	H	15	17	Right-handed 310
Helix 139	139	H	18	27	Right-handed alpha
Helix 140	140	H	30	34	Right-handed 310
Helix 141	141	H	44	46	Right-handed 310
Helix 142	142	H	47	54	Right-handed alpha
Helix 143	143	H	64	73	Right-handed alpha
Helix 144	144	H	102	107	Right-handed 310
Helix 145	145	H	116	126	Right-handed alpha
Helix 146	146	H	127	130	Right-handed 310
Helix 147	147	H	144	151	Right-handed alpha
Helix 148	148	H	163	175	Right-handed alpha
Helix 149	149	H	178	180	Right-handed 310
Helix 150	150	H	195	199	Right-handed 310
Helix 151	151	H	207	213	Right-handed alpha
Helix 152	152	H	213	234	Right-handed alpha
Helix 153	153	H	234	246	Right-handed alpha
Helix 154	154	H	247	250	Right-handed 310
Helix 155	155	H	251	263	Right-handed alpha
Helix 156	156	H	272	286	Right-handed alpha
Helix 157	157	H	312	331	Right-handed alpha

There are 12 sheets in PDB entry 4H6D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	84	first strand
Strand 2	F	201	206	anti-parallel
Strand 3	F	59	63	anti-parallel
Strand 4	F	6	9	parallel
Strand 5	F	37	42	parallel
Strand 6	A	37	42	anti-parallel
Strand 7	A	6	9	parallel
Strand 8	A	59	63	parallel
Strand 9	A	201	206	anti-parallel
Strand 10	A	77	84	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	140	first strand
Strand 2	F	110	113	parallel
Strand 3	F	156	160	parallel
Strand 4	F	89	94	anti-parallel
Strand 5	F	182	186	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	140	first strand
Strand 2	A	110	113	parallel
Strand 3	A	156	160	parallel
Strand 4	A	89	94	anti-parallel
Strand 5	A	182	185	anti-parallel

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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	84	first strand
Strand 2	B	201	206	anti-parallel
Strand 3	B	59	63	anti-parallel
Strand 4	B	6	9	parallel
Strand 5	B	37	42	parallel
Strand 6	H	37	42	anti-parallel
Strand 7	H	6	9	parallel
Strand 8	H	59	63	parallel
Strand 9	H	201	206	anti-parallel
Strand 10	H	77	84	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	140	first strand
Strand 2	B	110	113	parallel
Strand 3	B	156	160	parallel
Strand 4	B	89	94	anti-parallel
Strand 5	B	182	186	anti-parallel

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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	84	first strand
Strand 2	C	201	206	anti-parallel
Strand 3	C	59	63	anti-parallel
Strand 4	C	6	9	parallel
Strand 5	C	37	42	parallel
Strand 6	G	37	42	anti-parallel
Strand 7	G	6	9	parallel
Strand 8	G	59	63	parallel
Strand 9	G	201	206	anti-parallel
Strand 10	G	77	84	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	140	first strand
Strand 2	C	110	113	parallel
Strand 3	C	156	160	parallel
Strand 4	C	89	94	anti-parallel
Strand 5	C	182	186	anti-parallel

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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	84	first strand
Strand 2	D	201	206	anti-parallel
Strand 3	D	59	63	anti-parallel
Strand 4	D	6	9	parallel
Strand 5	D	37	42	parallel
Strand 6	E	37	42	anti-parallel
Strand 7	E	6	9	parallel
Strand 8	E	59	63	parallel
Strand 9	E	201	206	anti-parallel
Strand 10	E	77	84	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	140	first strand
Strand 2	D	110	113	parallel
Strand 3	D	156	160	parallel
Strand 4	D	89	94	anti-parallel
Strand 5	D	182	186	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	140	first strand
Strand 2	E	110	113	parallel
Strand 3	E	156	160	parallel
Strand 4	E	89	94	anti-parallel
Strand 5	E	182	185	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	137	140	first strand
Strand 2	G	110	113	parallel
Strand 3	G	156	160	parallel
Strand 4	G	89	94	anti-parallel
Strand 5	G	182	186	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	140	first strand
Strand 2	H	110	113	parallel
Strand 3	H	156	160	parallel
Strand 4	H	89	94	anti-parallel
Strand 5	H	182	186	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4H6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
4H6D