Analysis of interatomic Contacts of Structural Units in PDB entry:
4H6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4H6J entry

There are 2 chains in PDB entry 4H6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 238SER 343
B
 SER 356ASN 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4H6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
257 264Right-handed alpha
Helix 2
2
A
266 271Right-handed alpha
Helix 3
3
A
274 278Right-handed 310
Helix 4
4
A
283 298Right-handed alpha
Helix 5
5
B
379 385Right-handed alpha
Helix 6
6
B
387 391Right-handed 310
Helix 7
7
B
395 400Right-handed 310
Helix 8
8
B
404 418Right-handed alpha
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There are 3 sheets in PDB entry 4H6J. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 255first strand
Strand 2
A
241 246anti-parallel
Strand 3
A
332 341anti-parallel
Strand 4
A
314 325anti-parallel
Strand 5
A
299 301anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 255first strand
Strand 2
A
241 246anti-parallel
Strand 3
A
332 341anti-parallel
Strand 4
A
314 325anti-parallel
Strand 5
A
305 308anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
B
362 367anti-parallel
Strand 3
B
456 463anti-parallel
Strand 4
B
436 446anti-parallel
Strand 5
B
423 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il