Analysis of interatomic Contacts of Structural Units in PDB entry:
4H9S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4H9S entry

There are 6 chains in PDB entry 4H9S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 45GLU 133
B
 ARG 40GLU 133
C
 GLN 27PHE 100
D
 GLN 27PHE 100
E
 SER 184GLU 387
F
 SER 184GLU 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 4H9S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 58Right-handed alpha
Helix 2
2
A
63 79Right-handed alpha
Helix 3
3
A
86 111Right-handed alpha
Helix 4
4
A
120 132Right-handed alpha
Helix 5
5
B
47 58Right-handed alpha
Helix 6
6
B
63 78Right-handed alpha
Helix 7
7
B
86 111Right-handed alpha
Helix 8
8
B
120 132Right-handed alpha
Helix 9
9
C
30 41Right-handed alpha
Helix 10
10
C
47 76Right-handed alpha
Helix 11
11
C
82 91Right-handed alpha
Helix 12
12
C
92 93Right-handed 310
Helix 13
13
C
94 98Right-handed 310
Helix 14
14
D
30 41Right-handed alpha
Helix 15
15
D
49 76Right-handed alpha
Helix 16
16
D
82 92Right-handed alpha
Helix 17
17
D
93 98Right-handed 310
Helix 18
18
E
185 208Right-handed alpha
Helix 19
19
E
212 217Right-handed 310
Helix 20
20
E
220 244Right-handed alpha
Helix 21
21
E
251 255Right-handed 310
Helix 22
22
E
264 276Right-handed alpha
Helix 23
23
E
285 300Right-handed alpha
Helix 24
24
E
305 336Right-handed alpha
Helix 25
25
E
349 353Right-handed 310
Helix 26
26
E
354 387Right-handed alpha
Helix 27
27
F
185 208Right-handed alpha
Helix 28
28
F
213 217Right-handed 310
Helix 29
29
F
220 244Right-handed alpha
Helix 30
30
F
251 255Right-handed 310
Helix 31
31
F
264 276Right-handed alpha
Helix 32
32
F
285 300Right-handed alpha
Helix 33
33
F
305 335Right-handed alpha
Helix 34
34
F
338 343Right-handed alpha
Helix 35
35
F
349 353Right-handed 310
Helix 36
36
F
354 386Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4H9S. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 81first strand
Strand 2
A
83 85parallel
Strand 3
F
209 210anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
80 81first strand
Strand 2
B
83 85parallel
Strand 3
E
209 210anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il