Analysis of interatomic Contacts of Structural Units in PDB entry:
4HCX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HCX entry

There are 2 chains in PDB entry 4HCX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5GLU 406
B
 PRO 5GLU 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 4HCX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 34Right-handed alpha
Helix 2
2
A
48 55Right-handed alpha
Helix 3
3
A
57 71Right-handed alpha
Helix 4
4
A
82 90Right-handed alpha
Helix 5
5
A
97 107Right-handed alpha
Helix 6
6
A
139 144Right-handed 310
Helix 7
7
A
189 207Right-handed alpha
Helix 8
8
A
219 238Right-handed alpha
Helix 9
9
A
238 244Right-handed alpha
Helix 10
10
A
254 264Right-handed alpha
Helix 11
11
A
273 288Right-handed alpha
Helix 12
12
A
290 292Right-handed 310
Helix 13
13
A
315 325Right-handed alpha
Helix 14
14
A
332 351Right-handed alpha
Helix 15
15
A
352 371Right-handed alpha
Helix 16
16
A
376 384Right-handed alpha
Helix 17
17
A
391 405Right-handed alpha
Helix 18
18
B
19 34Right-handed alpha
Helix 19
19
B
48 55Right-handed alpha
Helix 20
20
B
57 71Right-handed alpha
Helix 21
21
B
82 90Right-handed alpha
Helix 22
22
B
97 107Right-handed alpha
Helix 23
23
B
139 144Right-handed 310
Helix 24
24
B
189 206Right-handed alpha
Helix 25
25
B
221 238Right-handed alpha
Helix 26
26
B
238 245Right-handed alpha
Helix 27
27
B
254 264Right-handed alpha
Helix 28
28
B
273 289Right-handed alpha
Helix 29
29
B
290 292Right-handed 310
Helix 30
30
B
315 324Right-handed alpha
Helix 31
31
B
332 351Right-handed alpha
Helix 32
32
B
352 372Right-handed alpha
Helix 33
33
B
376 384Right-handed alpha
Helix 34
34
B
391 405Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 4HCX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
38 39parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
13 17parallel
Strand 3
A
72 75parallel
Strand 4
A
306 310parallel
Strand 5
A
294 299anti-parallel
Strand 6
A
109 114anti-parallel
Strand 7
A
131 135anti-parallel
Strand 8
A
268 272parallel
Strand 9
A
210 214parallel
Strand 10
A
249 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 149first strand
Strand 2
A
180 188anti-parallel
Strand 3
B
180 188anti-parallel
Strand 4
B
145 149anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 175first strand
Strand 2
A
153 161anti-parallel
Strand 3
B
153 161anti-parallel
Strand 4
B
168 175anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
38 39parallel
Back to list of sheets
Back to top of page

There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
13 17parallel
Strand 3
B
72 75parallel
Strand 4
B
306 309parallel
Strand 5
B
298 299anti-parallel
Strand 6
B
109 114anti-parallel
Strand 7
B
131 135anti-parallel
Strand 8
B
268 272parallel
Strand 9
B
210 214parallel
Strand 10
B
249 253parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
13 17parallel
Strand 3
B
72 75parallel
Strand 4
B
306 309parallel
Strand 5
B
298 299anti-parallel
Strand 6
B
109 114anti-parallel
Strand 7
B
294 295anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il