Analysis of interatomic Contacts of Structural Units in PDB entry:
4HDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HDM entry

There are 2 chains in PDB entry 4HDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 341
B
 LEU 2ALA 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4HDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 11Right-handed alpha
Helix 2
2
A
15 31Right-handed alpha
Helix 3
3
A
36 51Right-handed alpha
Helix 4
4
A
69 75Right-handed 310
Helix 5
5
A
82 93Right-handed alpha
Helix 6
6
A
97 106Right-handed alpha
Helix 7
7
A
146 166Right-handed alpha
Helix 8
8
A
180 194Right-handed alpha
Helix 9
9
A
196 202Right-handed alpha
Helix 10
10
A
214 227Right-handed alpha
Helix 11
11
A
232 241Right-handed alpha
Helix 12
12
A
242 258Right-handed alpha
Helix 13
13
A
266 280Right-handed alpha
Helix 14
14
A
281 285Right-handed 310
Helix 15
15
A
295 306Right-handed alpha
Helix 16
16
A
320 338Right-handed alpha
Helix 17
17
B
3 8Right-handed alpha
Helix 18
18
B
13 27Right-handed alpha
Helix 19
19
B
34 49Right-handed alpha
Helix 20
20
B
79 89Right-handed alpha
Helix 21
21
B
92 101Right-handed alpha
Helix 22
22
B
141 162Right-handed alpha
Helix 23
23
B
175 189Right-handed alpha
Helix 24
24
B
196 211Right-handed alpha
Helix 25
25
B
216 225Right-handed alpha
Helix 26
26
B
226 242Right-handed alpha
Helix 27
27
B
250 264Right-handed alpha
Helix 28
28
B
265 269Right-handed 310
Helix 29
29
B
281 290Right-handed alpha
Helix 30
30
B
304 324Right-handed alpha
Helix 31
31
B
326 332Right-handed alpha
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There are 2 sheets in PDB entry 4HDM. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
109 116parallel
Strand 3
A
59 67parallel
Strand 4
A
169 177parallel
Strand 5
A
261 263parallel
Strand 6
A
287 288parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
103 111parallel
Strand 3
B
58 65parallel
Strand 4
B
166 172parallel
Strand 5
B
245 247parallel
Strand 6
B
271 272parallel
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