Analysis of interatomic Contacts of Structural Units in PDB entry:
4HGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HGE entry

There are 4 chains in PDB entry 4HGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 843GLU 1006
A
 LYS 1009GLY 1132
B
 ARG 839GLU 1006
B
 LYS 1009GLY 1132
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 4HGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
845 847Right-handed 310
Helix 2
2
A
888 904Right-handed alpha
Helix 3
3
A
936 944Right-handed alpha
Helix 4
4
A
945 948Right-handed 310
Helix 5
5
A
949 970Right-handed alpha
Helix 6
6
A
978 980Right-handed 310
Helix 7
7
A
1017 1021Right-handed 310
Helix 8
8
A
1022 1029Right-handed alpha
Helix 9
9
A
1032 1050Right-handed alpha
Helix 10
10
A
1052 1055Right-handed 310
Helix 11
11
A
1056 1066Right-handed alpha
Helix 12
12
A
1071 1084Right-handed alpha
Helix 13
13
A
1095 1106Right-handed alpha
Helix 14
14
A
1109 1113Right-handed 310
Helix 15
15
A
1115 1131Right-handed alpha
Helix 16
16
B
845 847Right-handed 310
Helix 17
17
B
888 904Right-handed alpha
Helix 18
18
B
936 945Right-handed alpha
Helix 19
19
B
949 970Right-handed alpha
Helix 20
20
B
978 980Right-handed 310
Helix 21
21
B
1017 1021Right-handed 310
Helix 22
22
B
1022 1029Right-handed alpha
Helix 23
23
B
1032 1049Right-handed alpha
Helix 24
24
B
1056 1066Right-handed alpha
Helix 25
25
B
1072 1084Right-handed alpha
Helix 26
26
B
1095 1106Right-handed alpha
Helix 27
27
B
1109 1113Right-handed 310
Helix 28
28
B
1115 1132Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4HGE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
849 858first strand
Strand 2
A
861 868anti-parallel
Strand 3
A
877 884anti-parallel
Strand 4
A
926 930anti-parallel
Strand 5
A
913 917anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
972 973first strand
Strand 2
A
999 1000anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
982 986first strand
Strand 2
A
989 992anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1008 1009first strand
Strand 2
A
1030 1031anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
843 844first strand
Strand 2
B
913 917parallel
Strand 3
B
926 930anti-parallel
Strand 4
B
878 884anti-parallel
Strand 5
B
861 868anti-parallel
Strand 6
B
849 858anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
972 973first strand
Strand 2
B
999 1000anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
982 986first strand
Strand 2
B
989 992anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1008 1009first strand
Strand 2
B
1030 1031anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il