Analysis of interatomic Contacts of Structural Units in PDB entry:
4HH1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HH1 entry

There are 2 chains in PDB entry 4HH1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 14ALA 398
B
 ASP 15ALA 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 4HH1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 49Right-handed alpha
Helix 2
2
A
68 81Right-handed alpha
Helix 3
3
A
112 119Right-handed alpha
Helix 4
4
A
141 163Right-handed alpha
Helix 5
5
A
169 171Right-handed 310
Helix 6
6
A
172 202Right-handed alpha
Helix 7
7
A
206 218Right-handed alpha
Helix 8
8
A
220 241Right-handed alpha
Helix 9
9
A
245 264Right-handed alpha
Helix 10
10
A
286 300Right-handed alpha
Helix 11
11
A
311 323Right-handed alpha
Helix 12
12
A
338 354Right-handed alpha
Helix 13
13
A
365 370Right-handed 310
Helix 14
14
A
371 379Right-handed alpha
Helix 15
15
A
386 388Right-handed 310
Helix 16
16
A
389 398Right-handed alpha
Helix 17
17
B
30 49Right-handed alpha
Helix 18
18
B
68 81Right-handed alpha
Helix 19
19
B
112 117Right-handed alpha
Helix 20
20
B
141 163Right-handed alpha
Helix 21
21
B
171 202Right-handed alpha
Helix 22
22
B
206 218Right-handed alpha
Helix 23
23
B
220 241Right-handed alpha
Helix 24
24
B
245 264Right-handed alpha
Helix 25
25
B
286 300Right-handed alpha
Helix 26
26
B
311 323Right-handed alpha
Helix 27
27
B
338 354Right-handed alpha
Helix 28
28
B
365 370Right-handed 310
Helix 29
29
B
371 378Right-handed alpha
Helix 30
30
B
386 388Right-handed 310
Helix 31
31
B
389 398Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4HH1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 96first strand
Strand 2
A
16 25anti-parallel
Strand 3
A
60 67anti-parallel
Strand 4
A
51 57anti-parallel
Strand 5
A
107 111parallel
Strand 6
A
127 129parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 307first strand
Strand 2
A
274 279parallel
Strand 3
A
326 329parallel
Strand 4
A
360 363parallel
Strand 5
A
382 383parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 95first strand
Strand 2
B
17 25anti-parallel
Strand 3
B
60 67anti-parallel
Strand 4
B
51 57anti-parallel
Strand 5
B
107 111parallel
Strand 6
B
127 129parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 307first strand
Strand 2
B
275 279parallel
Strand 3
B
326 329parallel
Strand 4
B
360 363parallel
Strand 5
B
382 383parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il