Analysis of interatomic Contacts of Structural Units in PDB entry:
4HH2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HH2 entry

There are 4 chains in PDB entry 4HH2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6SER 378
B
 SER 6SER 378
C
 SER 6SER 378
D
 SER 6GLY 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 55 helices in PDB entry 4HH2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 23Right-handed alpha
Helix 2
2
A
49 54Right-handed 310
Helix 3
3
A
57 62Right-handed 310
Helix 4
4
A
63 75Right-handed alpha
Helix 5
5
A
120 158Right-handed alpha
Helix 6
6
A
176 184Right-handed alpha
Helix 7
7
A
186 191Right-handed alpha
Helix 8
8
A
194 197Right-handed 310
Helix 9
9
A
206 216Right-handed alpha
Helix 10
10
A
264 277Right-handed alpha
Helix 11
11
A
294 301Right-handed alpha
Helix 12
12
A
305 310Right-handed alpha
Helix 13
13
A
313 318Right-handed 310
Helix 14
14
A
321 336Right-handed alpha
Helix 15
15
B
11 23Right-handed alpha
Helix 16
16
B
50 54Right-handed 310
Helix 17
17
B
57 61Right-handed 310
Helix 18
18
B
63 74Right-handed alpha
Helix 19
19
B
92 97Right-handed alpha
Helix 20
20
B
120 158Right-handed alpha
Helix 21
21
B
176 184Right-handed alpha
Helix 22
22
B
186 191Right-handed alpha
Helix 23
23
B
194 199Right-handed 310
Helix 24
24
B
203 218Right-handed alpha
Helix 25
25
B
264 277Right-handed alpha
Helix 26
26
B
294 301Right-handed alpha
Helix 27
27
B
305 310Right-handed alpha
Helix 28
28
B
313 318Right-handed 310
Helix 29
29
B
321 335Right-handed alpha
Helix 30
30
C
11 23Right-handed alpha
Helix 31
31
C
49 54Right-handed 310
Helix 32
32
C
57 62Right-handed 310
Helix 33
33
C
63 77Right-handed alpha
Helix 34
34
C
125 158Right-handed alpha
Helix 35
35
C
176 184Right-handed alpha
Helix 36
36
C
186 191Right-handed alpha
Helix 37
37
C
194 199Right-handed 310
Helix 38
38
C
203 218Right-handed alpha
Helix 39
39
C
264 277Right-handed alpha
Helix 40
40
C
294 302Right-handed alpha
Helix 41
41
C
305 310Right-handed alpha
Helix 42
42
C
313 318Right-handed 310
Helix 43
43
C
321 336Right-handed alpha
Helix 44
44
D
11 23Right-handed alpha
Helix 45
45
D
44 54Right-handed 310
Helix 46
46
D
63 77Right-handed alpha
Helix 47
47
D
120 158Right-handed alpha
Helix 48
48
D
176 184Right-handed alpha
Helix 49
49
D
186 191Right-handed alpha
Helix 50
50
D
195 199Right-handed 310
Helix 51
51
D
205 217Right-handed alpha
Helix 52
52
D
264 277Right-handed alpha
Helix 53
53
D
294 301Right-handed alpha
Helix 54
54
D
313 317Right-handed 310
Helix 55
55
D
321 336Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 4HH2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
25 29anti-parallel
Strand 3
A
113 119anti-parallel
Strand 4
A
97 106anti-parallel
Strand 5
A
84 91anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
162 166anti-parallel
Strand 3
A
246 255anti-parallel
Strand 4
A
233 243anti-parallel
Strand 5
A
223 227anti-parallel
Strand 6
A
199 200anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 293first strand
Strand 2
A
280 285anti-parallel
Strand 3
A
369 376anti-parallel
Strand 4
A
353 362anti-parallel
Strand 5
A
337 345anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
25 29anti-parallel
Strand 3
B
113 119anti-parallel
Strand 4
B
100 106anti-parallel
Strand 5
B
84 88anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 175first strand
Strand 2
B
162 166anti-parallel
Strand 3
B
246 255anti-parallel
Strand 4
B
233 243anti-parallel
Strand 5
B
223 226anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 293first strand
Strand 2
B
280 285anti-parallel
Strand 3
B
369 376anti-parallel
Strand 4
B
352 361anti-parallel
Strand 5
B
337 346anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 40first strand
Strand 2
C
25 29anti-parallel
Strand 3
C
113 119anti-parallel
Strand 4
C
97 106anti-parallel
Strand 5
C
84 91anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 175first strand
Strand 2
C
162 166anti-parallel
Strand 3
C
246 255anti-parallel
Strand 4
C
233 243anti-parallel
Strand 5
C
223 226anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
290 293first strand
Strand 2
C
280 285anti-parallel
Strand 3
C
369 376anti-parallel
Strand 4
C
353 362anti-parallel
Strand 5
C
337 345anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 40first strand
Strand 2
D
25 29anti-parallel
Strand 3
D
113 119anti-parallel
Strand 4
D
97 106anti-parallel
Strand 5
D
84 91anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
172 175first strand
Strand 2
D
162 166anti-parallel
Strand 3
D
246 255anti-parallel
Strand 4
D
233 243anti-parallel
Strand 5
D
223 226anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
290 293first strand
Strand 2
D
280 284anti-parallel
Strand 3
D
369 376anti-parallel
Strand 4
D
351 362anti-parallel
Strand 5
D
337 347anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il