Analysis of interatomic Contacts of Structural Units in PDB entry:
4HJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HJC entry

There is 1 chain in PDB entry 4HJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 691ASP 1118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4HJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
797 801Right-handed 310
Helix 2
2
A
820 824Right-handed 310
Helix 3
3
A
899 903Right-handed 310
Helix 4
4
A
936 943Right-handed alpha
Helix 5
5
A
971 979Right-handed alpha
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There are 8 sheets in PDB entry 4HJC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
693 696first strand
Strand 2
A
729 735parallel
Strand 3
A
742 764anti-parallel
Strand 4
A
847 864anti-parallel
Strand 5
A
904 908anti-parallel
Strand 6
A
912 916anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
870 875first strand
Strand 2
A
847 864anti-parallel
Strand 3
A
742 764anti-parallel
Strand 4
A
999 1003anti-parallel
Strand 5
A
988 992anti-parallel
Strand 6
A
983 985anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
702 706first strand
Strand 2
A
711 722anti-parallel
Strand 3
A
1009 1021anti-parallel
Strand 4
A
886 893anti-parallel
Strand 5
A
880 882anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
767 776first strand
Strand 2
A
832 841anti-parallel
Strand 3
A
810 815anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
932 933first strand
Strand 2
A
948 949anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 959first strand
Strand 2
A
962 967anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1030 1038first strand
Strand 2
A
1046 1054anti-parallel
Strand 3
A
1078 1086anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1070 1075first strand
Strand 2
A
1058 1064anti-parallel
Strand 3
A
1092 1100anti-parallel
Strand 4
A
1106 1113anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il