Analysis of interatomic Contacts of Structural Units in PDB entry:
4HJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HJJ entry

There are 3 chains in PDB entry 4HJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 37ALA 193
H
 GLU 1LYS 348
L
 ASP 1GLU 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 4HJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
70 77Right-handed alpha
Helix 2
2
A
112 116Right-handed 310
Helix 3
3
A
182 186Right-handed 310
Helix 4
4
H
65 67Right-handed 310
Helix 5
5
H
88 92Right-handed 310
Helix 6
6
H
153 157Right-handed 310
Helix 7
7
H
212 216Right-handed 310
Helix 8
8
H
290 292Right-handed 310
Helix 9
9
H
335 338Right-handed 310
Helix 10
10
L
79 83Right-handed 310
Helix 11
11
L
192 196Right-handed 310
Helix 12
12
L
235 240Right-handed alpha
Helix 13
13
L
297 302Right-handed alpha
Back to top of page

There are 21 sheets in PDB entry 4HJJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 121first strand
Strand 2
A
107 111anti-parallel
Strand 3
A
96 103anti-parallel
Strand 4
A
83 90anti-parallel
Strand 5
A
137 141first strand
Strand 6
A
149 153anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
38 42anti-parallel
Strand 3
A
83 90anti-parallel
Strand 4
A
96 103anti-parallel
Strand 5
A
45 49first strand
Strand 6
A
188 191anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
64 67anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 166first strand
Strand 2
A
169 176anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
79 84anti-parallel
Strand 4
H
69 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
113 117parallel
Strand 3
H
93 100anti-parallel
Strand 4
H
35 41anti-parallel
Strand 5
H
48 54anti-parallel
Strand 6
H
58 61anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
113 117parallel
Strand 3
H
93 100anti-parallel
Strand 4
H
106 109anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
128 131first strand
Strand 2
H
143 150anti-parallel
Strand 3
H
203 208anti-parallel
Strand 4
H
194 198anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
135 137first strand
Strand 2
H
240 244parallel
Strand 3
H
217 224anti-parallel
Strand 4
H
159 164anti-parallel
Strand 5
H
170 176anti-parallel
Strand 6
H
183 185anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
135 137first strand
Strand 2
H
240 244parallel
Strand 3
H
217 224anti-parallel
Strand 4
H
233 236anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
253 257first strand
Strand 2
H
269 279anti-parallel
Strand 3
H
310 319anti-parallel
Strand 4
H
297 299anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
253 257first strand
Strand 2
H
269 279anti-parallel
Strand 3
H
310 319anti-parallel
Strand 4
H
303 304anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
285 288first strand
Strand 2
H
329 334anti-parallel
Strand 3
H
339 344anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
97 98anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 120first strand
Strand 2
L
132 138anti-parallel
Strand 3
L
183 188anti-parallel
Strand 4
L
175 180anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
123 126first strand
Strand 2
L
216 220parallel
Strand 3
L
198 206anti-parallel
Strand 4
L
146 151anti-parallel
Strand 5
L
158 162anti-parallel
Strand 6
L
166 167anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
123 126first strand
Strand 2
L
216 220parallel
Strand 3
L
198 206anti-parallel
Strand 4
L
209 212anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
228 232first strand
Strand 2
L
243 253anti-parallel
Strand 3
L
287 296anti-parallel
Strand 4
L
273 277anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
267 268first strand
Strand 2
L
258 264anti-parallel
Strand 3
L
305 312anti-parallel
Strand 4
L
319 324anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il