Analysis of interatomic Contacts of Structural Units in PDB entry:
4HMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HMO entry

There is 1 chain in PDB entry 4HMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 34LYS 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4HMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 72Right-handed alpha
Helix 2
2
A
93 103Right-handed alpha
Helix 3
3
A
117 124Right-handed alpha
Helix 4
4
A
137 146Right-handed alpha
Helix 5
5
A
161 173Right-handed alpha
Helix 6
6
A
175 196Right-handed alpha
Helix 7
7
A
197 205Right-handed alpha
Helix 8
8
A
229 238Right-handed alpha
Helix 9
9
A
243 250Right-handed 310
Helix 10
10
A
262 268Right-handed 310
Helix 11
11
A
280 288Right-handed alpha
Helix 12
12
A
290 293Right-handed 310
Helix 13
13
A
294 299Right-handed alpha
Helix 14
14
A
309 315Right-handed alpha
Helix 15
15
A
318 338Right-handed alpha
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There are 4 sheets in PDB entry 4HMO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
47 52anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
128 131parallel
Strand 3
A
150 152parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
109 110parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 260first strand
Strand 2
A
221 225anti-parallel
Strand 3
A
209 213anti-parallel
Strand 4
A
272 277parallel
Strand 5
A
302 306parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il