Analysis of interatomic Contacts of Structural Units in PDB entry:
4HMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HMP entry

There are 2 chains in PDB entry 4HMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 40ALA 340
B
 ILE 40ALA 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 4HMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 72Right-handed alpha
Helix 2
2
A
93 103Right-handed alpha
Helix 3
3
A
117 124Right-handed alpha
Helix 4
4
A
137 146Right-handed alpha
Helix 5
5
A
161 172Right-handed alpha
Helix 6
6
A
175 197Right-handed alpha
Helix 7
7
A
197 205Right-handed alpha
Helix 8
8
A
229 238Right-handed alpha
Helix 9
9
A
262 270Right-handed 310
Helix 10
10
A
280 288Right-handed alpha
Helix 11
11
A
290 293Right-handed 310
Helix 12
12
A
294 300Right-handed alpha
Helix 13
13
A
309 314Right-handed alpha
Helix 14
14
A
318 337Right-handed alpha
Helix 15
15
A
338 340Right-handed 310
Helix 16
16
B
64 72Right-handed alpha
Helix 17
17
B
93 103Right-handed alpha
Helix 18
18
B
117 124Right-handed alpha
Helix 19
19
B
137 146Right-handed alpha
Helix 20
20
B
161 172Right-handed alpha
Helix 21
21
B
175 197Right-handed alpha
Helix 22
22
B
197 205Right-handed alpha
Helix 23
23
B
229 238Right-handed alpha
Helix 24
24
B
262 268Right-handed 310
Helix 25
25
B
280 287Right-handed alpha
Helix 26
26
B
290 293Right-handed 310
Helix 27
27
B
294 300Right-handed alpha
Helix 28
28
B
309 314Right-handed alpha
Helix 29
29
B
318 337Right-handed alpha
Helix 30
30
B
338 340Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 4HMP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
47 50anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
78 80parallel
Strand 3
A
58 60parallel
Strand 4
A
128 130parallel
Strand 5
A
150 151parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 260first strand
Strand 2
A
218 225anti-parallel
Strand 3
A
209 215anti-parallel
Strand 4
A
272 277parallel
Strand 5
A
302 306parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
47 50anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 110first strand
Strand 2
B
78 80parallel
Strand 3
B
58 60parallel
Strand 4
B
128 130parallel
Strand 5
B
150 151parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 260first strand
Strand 2
B
218 225anti-parallel
Strand 3
B
209 215anti-parallel
Strand 4
B
272 277parallel
Strand 5
B
302 306parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il