Analysis of interatomic Contacts of Structural Units in PDB entry:
4HMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HMZ entry

There are 4 chains in PDB entry 4HMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 198
B
 MET 1HIS 199
C
 MET 1HIS 200
D
 MET 1HIS 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4HMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 38Right-handed alpha
Helix 2
2
A
137 139Right-handed 310
Helix 3
3
A
164 169Right-handed alpha
Helix 4
4
A
172 179Right-handed alpha
Helix 5
5
A
184 198Right-handed alpha
Helix 6
6
B
30 38Right-handed alpha
Helix 7
7
B
137 139Right-handed 310
Helix 8
8
B
164 169Right-handed alpha
Helix 9
9
B
172 179Right-handed alpha
Helix 10
10
B
184 199Right-handed alpha
Helix 11
11
C
30 38Right-handed alpha
Helix 12
12
C
137 139Right-handed 310
Helix 13
13
C
164 169Right-handed alpha
Helix 14
14
C
172 179Right-handed alpha
Helix 15
15
C
184 200Right-handed alpha
Helix 16
16
D
30 38Right-handed alpha
Helix 17
17
D
137 139Right-handed 310
Helix 18
18
D
164 169Right-handed alpha
Helix 19
19
D
172 179Right-handed alpha
Helix 20
20
D
184 200Right-handed alpha
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There are 7 sheets in PDB entry 4HMZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
9 12anti-parallel
Strand 3
A
108 111anti-parallel
Strand 4
A
70 76anti-parallel
Strand 5
A
126 132anti-parallel
Strand 6
A
45 51anti-parallel
Strand 7
B
22 29anti-parallel
Strand 8
B
17 19anti-parallel
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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
9 12anti-parallel
Strand 3
B
108 111anti-parallel
Strand 4
B
70 76anti-parallel
Strand 5
B
126 132anti-parallel
Strand 6
B
45 51anti-parallel
Strand 7
A
22 29anti-parallel
Strand 8
A
16 19anti-parallel
Strand 9
C
16 19anti-parallel
Strand 10
C
22 29anti-parallel
Strand 11
D
45 51anti-parallel
Strand 12
D
126 132anti-parallel
Strand 13
D
70 76anti-parallel
Strand 14
D
108 111anti-parallel
Strand 15
D
9 12anti-parallel
Strand 16
D
2 3anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 102first strand
Strand 2
A
78 84anti-parallel
Strand 3
A
116 121anti-parallel
Strand 4
A
56 62anti-parallel
Strand 5
A
141 143anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 102first strand
Strand 2
B
78 84anti-parallel
Strand 3
B
116 121anti-parallel
Strand 4
B
56 62anti-parallel
Strand 5
B
141 143anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 3first strand
Strand 2
C
9 12anti-parallel
Strand 3
C
108 111anti-parallel
Strand 4
C
70 76anti-parallel
Strand 5
C
126 132anti-parallel
Strand 6
C
45 51anti-parallel
Strand 7
D
22 29anti-parallel
Strand 8
D
17 19anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 102first strand
Strand 2
C
78 84anti-parallel
Strand 3
C
116 121anti-parallel
Strand 4
C
56 62anti-parallel
Strand 5
C
141 143anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
96 102first strand
Strand 2
D
78 84anti-parallel
Strand 3
D
116 121anti-parallel
Strand 4
D
56 62anti-parallel
Strand 5
D
141 143anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il