Analysis of interatomic Contacts of Structural Units in PDB entry:
4HNE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HNE entry

There are 2 chains in PDB entry 4HNE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 71THR 453
B
 GLY 70GLU 452
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 4HNE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 94Right-handed alpha
Helix 2
2
A
94 100Right-handed alpha
Helix 3
3
A
107 123Right-handed alpha
Helix 4
4
A
155 157Right-handed 310
Helix 5
5
A
166 172Right-handed alpha
Helix 6
6
A
188 204Right-handed alpha
Helix 7
7
A
224 231Right-handed alpha
Helix 8
8
A
270 280Right-handed alpha
Helix 9
9
A
283 304Right-handed alpha
Helix 10
10
A
364 374Right-handed 310
Helix 11
11
A
377 389Right-handed alpha
Helix 12
12
A
390 407Right-handed alpha
Helix 13
13
A
412 436Right-handed alpha
Helix 14
14
A
439 446Right-handed alpha
Helix 15
15
B
74 95Right-handed alpha
Helix 16
16
B
107 122Right-handed alpha
Helix 17
17
B
155 157Right-handed 310
Helix 18
18
B
163 168Right-handed alpha
Helix 19
19
B
188 204Right-handed alpha
Helix 20
20
B
224 231Right-handed alpha
Helix 21
21
B
270 280Right-handed alpha
Helix 22
22
B
283 304Right-handed alpha
Helix 23
23
B
364 374Right-handed 310
Helix 24
24
B
377 389Right-handed alpha
Helix 25
25
B
390 406Right-handed alpha
Helix 26
26
B
412 436Right-handed alpha
Helix 27
27
B
439 446Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4HNE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
138 141anti-parallel
Strand 3
A
147 153anti-parallel
Strand 4
A
256 262anti-parallel
Strand 5
A
211 216anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
249 251anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
314 319anti-parallel
Strand 3
A
339 344anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
138 141anti-parallel
Strand 3
B
147 153anti-parallel
Strand 4
B
256 262anti-parallel
Strand 5
B
211 216anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 269first strand
Strand 2
B
314 318anti-parallel
Strand 3
B
340 344anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il